1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATGGAGCATTTGGCACTGAGTACCTGCAAGAGGTTACTGATGTGAAAGGCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactcacttctgctagatgtacccaatatccatttggagtgctgattttgcattttaccatggtgccctggattaaatatcaaggaatagaacttt...
species | Vitis vinifera |
transcript | Vv00s0313g00030.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|161710023|gb|FC060239.1|FC060239
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32267466|gb|CD716429.1|CD716429
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|30301036|gb|CB977830.1|CB977830
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|110703560|gb|EE080515.1|EE080515
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGA-GTAAAGCTGAGAAAEST: gi|46917634|gb|CN546963.1|CN546963
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|30326708|gb|CD009970.1|CD009970
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32267671|gb|CD716634.1|CD716634
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32247339|gb|CD713158.1|CD713158
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|30135746|gb|CB921084.1|CB921084
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32268570|gb|CD717729.1|CD717729
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|29786039|gb|CB343476.2|CB343476
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32270504|gb|CD719663.1|CD719663
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|71871778|gb|DT020833.1|DT020833
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|71876785|gb|DT025840.1|DT025840
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|161720195|gb|FC066766.1|FC066766
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|32267988|gb|CD717147.1|CD717147
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|30325113|gb|CD008375.1|CD008375
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAAEST: gi|30324596|gb|CD007858.1|CD007858
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
EST: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAG GATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
genomic: GCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactca ... cataatgcagGATATGGCTGCCCATTCGGCTTGTGATTTTGGTGGAGGTAAAGCTGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGAGCATTTGGCACTGAGTACCTGCAAGAGGTTACTGATGTGAAAGGCGAACAAGAGGCAGGAAAATTTGCTGTGCTACACCTTCGTTTTGATAAGgtatgactcacttctgctagatgtacccaatatccatttggagtgctgattttgcattttaccatggtgccctggattaaatatcaaggaatagaacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata