Sequence
atgc intronic sequence ATGC exonic sequenceGATTGGCATGCTGCCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggctaacacagtacaacttgatcttatattttttccaatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G100809_T01 (Zea mays), 5'ss of exon 6
GATTGGCATGCTGCCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatctgcttgtgtctt-tggatttgctttatatttttgtatgcag-atttgatggctaac--acagtacaactt-gatcttatat--tttttccaatttag---
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GATTGATAGCGTGCCTCTTTTGGAATATCATAGCAACTACAACAGCATGGATTAAAGGGGAAGgt--acaactaatcgtgttttattgtcacatcctccatcttcttccatagcacatgttaccttactgacacttcaattttaaactaatatgacctatctacttcaaaag
upper sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G174730_T01 (Zea mays), 5'ss of exon 6
GATTGGCATGCTGCCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatctgcttgtgtctt--tgg-atttgctttatatttttgtat-gcagatttgatggctaacacagtacaacttgatcttatat--tttttccaatttag---
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GATTGATAGCGTGTCTCTTTTGGAATGTCATAGCAACTACAACAGCATGGATTAAAGGGGAAGgt-ataactaaagtgtgccttactgtcatctcatttatcttcctccatcacactttgccttactgacgcttca-agttcaaactaatatgacctatctacttcaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110694691|gb|EE072020.1|EE072020EST: CCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAG GGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAG
genomic: CCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatct ... tccaatttagGGGTAAAAATCTGGTTTCTTGCTATTATCTACTTCATAGCCGGGGTCCCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGGCATGCTGCCTTACATGGAATATTATAGCAACTACTACAGCATGGATTAAAGGGGAAGgtcagtatctgcttgtgtctttggatttgctttatatttttgtatgcagatttgatggctaacacagtacaacttgatcttatattttttccaatttag
- - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - CATGGA