Sequence
atgc intronic sequence ATGC exonic sequenceGTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcaccctgctttacctacttatttccatgctagtttctttcctagaatgacaatcctatagaagggtccaatcaaatagaaaaaagagaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G32670.1 (Glycine max), 5'ss of exon 10
GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcaccctgctttacctacttatttccatgctagtttctttcctagaatgacaatcctatagaagggtccaatcaaatagaaaaaagagaaa---
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GTCAAAATCTGTAACCCAAATATTTGAGAAGTTCTCGAGATTTTTGAATGATATGAAAGAACTTTTGCTTGATAAGGTTTATGTTGTCAATGTTCTAGgtacttctttctccca---ctaactacagtatgctttgacagattttgtattatttacctattttgttagtaaattcatgtcagaggctgctatatggatagc
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 9
GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcacc-------ctgctttacctacttatttccatgctagtttctttcctagaatgacaatc-ctatagaagggtccaatcaaatagaaaaaa-----gagaaa---------------------------------------------------------------------------------
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GTCAAAA----TGTGCAATATT--AGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAGGTTTTTGTTGTCAATGTTCTAGgtacttcttcctccttctgatctactatatgcatcaatttatttattgatttaatttgtgttgttaaattcatcttagaagctgccatttgactagcttacttctttgtgaacttcatatatcaatctcctctacctatatgtataatcatattgttttgccacatcaattaattctgttgcatctatttacag
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G30370.1 (Glycine max), 5'ss of exon 10
GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcacc-------ctgctttacctacttatttccatgctagtttctttcctagaatgacaatcctat-agaagggtccaatcaaatagaaaaaagagaaa-----------------------------------------------------------------------------------------
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GTCAAAA----TGCACAATATT--AGATCAGTTCTCAAGATTTCTGAAAGACATGAAAGAACTTTTGCTTGATAAAGTTTTTGTTGTCAATGTTCTAGgtacttcttcctcctactgatctactatatgcatcaatttatttattgatttagtttgtgttgttaaattcatcttagaagcttccatttgactagctttcatatatcaatctcctctacttgtatgtataccatgttcaaatatcatatggttttgccacatcatttaattttgttgcatgaatgtctatttacag
upper sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G06660.1 (Glycine max), 5'ss of exon 8
GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcaccc------tgctttacctacttat---ttccatgctagtttctttcctagaatgacaatcctatagaagggtccaatcaaatagaaaaaagagaaa
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GTCAAAATCTGCAACCCAAATATTTGAGCAGTTCTTGAGATTTTTGAATGATATGAAAGAACTTTGGCTTGATAAGGTTTATGTTGTCAATGTTCTAGgtacttctttctcccactaactacagtatgcattgatgacctttgtattatttaccttattttgttagtaaattcatgtcggaggctgct-atatggatag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871367|gb|DT020422.1|DT020422EST: AGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAG GATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAA
genomic: AGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttct ... ctattttcagGATATATATCTTATAACTTTGTCATAGGCGCATACTCTTACTGGGGGCCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAACAATTTCTTCCAATAATGTAAACCAGTTCTCAAGATTTTTTAAAGATATGAAAGTTCTTTTGTGTGATAAGGTGTATGTTGTAAATGTTCTAGgtatttttctcaccctgctttacctacttatttccatgctagtttctttcctagaatgacaatcctatagaagggtccaatcaaatagaaaaaagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa