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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag

Basic information

species Vitis vinifera
transcript Vv00s0282g00020.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 6
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgt-acgatttaatatttgcgtaactctttatcgtcctcttttta--tataattaatgatgcttttatatttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag
|||||||| ||||||||||| ||||||||| ||||||| ||||| ||  ||||||| || || || ||||| |  |  | |   | ||     ||||| || ||       |     | | ||   | | || | | |     | ||   | ||||   ||||   |  || ||  |  |||  |     | |||||                                                  
CTTCTTGCTGAGAAAGGTGAACTCCCAACAAGATTTGGCTCAGCTACACTGGGAATCCTCCTCCTGCAGgtgattagctgaatctagccctcttctttttcttcactgaactggcccttaatagaaaagtttctttctagtggtgtatgctccatt---aatt---cctggatgtcttttgctgat---acttcacag-------------------------------------------------

upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 6
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgta--cgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttat-atttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag
|||||||| ||||||||||| || |||||| ||||||||||||| ||  ||||||| ||||| || ||||||  ||||  ||    |    |  |   |  |  |   || | || || | |   || ||   |  | |      | | ||   | ||| || |   |  | ||   |   ||                                                                
CTTCTTGCCGAGAAAGGTGAACTTCCAACAAGATTTGGTTCAGCTACACTGGGAATTCTTCTCCTGCAGgtatccgatcgaagccctatacattttcctgcctccaaattatcat-tattcatgaatcctccaaggagtgtgagatgcattaattcctggatgta-ttctgctgatactcacag---------------------------------------------------------------

upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 7
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtac--gatttaatatttgcgtaact--ctttatcgtcctctttttatataattaatgatgcttttatatttc--cttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag
||||||||||||| ||||||||| || ||| ||||||| ||||||||| | |||||||||||  | |||||    |  ||||  | |   ||  |  |  | || | |||    |||  ||||  | ||      | | |     | |||    ||||| || || |                                                                                   
CTTCTTGCAGAGAGAGGTGAGCTTCCTACAAGATTTGGCTCAGCAACTCTTGGAATACTTCTTTTGCAGgtttttgtcttaaactcttactaggttacagtctcattctccaagtatgcaattttttataaaaggaaaatgtggttgttagaactcattttgtatataa---------------------------------------------------------------------------------

upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 8
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaatttggctagggtgggtcatgcaaagtaggcatcacaaagtatcaagtcaataacatttttggattcccactgcttgatatttgcag
||||||||||||| ||||||||| || ||  ||||||||||||||||| | |||||||||||  | |||||    |||  | ||    |    |||  |     |||  |||  ||  ||||  |  | | | |      | |   | | |    ||| |    | |  || ||    |                                                                 
CTTCTTGCAGAGAGAGGTGAGCTTCCTACGAGATTTGGTTCAGCAACTCTCGGAATACTTCTTTTGCAGgt----ttttgtcttacactcttgcttggttacagtctcattaagtatgtaatatt--tatcacaaaaaaatgtggatgtta----gaactcatattgtatgagtttacc-----------------------------------------------------------------

upper sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 7
CTTCTTGCAGAGAAAGGTGAGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgatttaatatttgcgtaactctttatcgtcctctttttatataattaatgatgcttttatatttccttttacttttcattctgaa--------tttggctagggtgggtcatgcaaagtaggca--------tcacaaagtatc-aagtcaataacatttttggattcccactgcttga--tatttgcag
|||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||| |||||||| |   |||     ||  ||| ||| |||| ||   | | |   |  |||       ||  | |     | | | | |  |||  | |        |   | |  |     |||| |||  || |||           |||| |    ||||  | || |  |||  | |  | || || |   |  ||||||
CTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGATTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGgttctgcttatc--ctgtataa-tctctatcttctattctatgactttttatctgacattccaaaagatatgtcaatatgtatttgggaaaagaatctcctgttttgaaaattcatccaagataagcaaaaatcttgtgcaaactcctgaagttgacaa-accttttcacttacgcttctcgcattgcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706912|gb|FC056800.1|FC056800
EST:     AGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAG                         GACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGC
genomic: AGCTCCCAACACGATTTGGTTCAGCAACTTTGGGAATACTTCTACTACAGgtacgattta ... atatttgcagGACATAGCAGTTGTCCCTCTCTTAGTCATACTTCCAGTGC