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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAAGATGGATTGTGAATCTTATAACGACCTCAAAGCTTGATGCTAAAATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttatagaacagactgctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcag

Basic information

species Vitis vinifera
transcript Vv00s0252g00070.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 7
CTGAAAGATGGATTGTGAATCTTATAACGACCTCAAAGCTTGATGCTAAAATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttatagaacagactg--ctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaa----tgttgatttt---ccttgctttcag
|||| ||||||||||| ||||| ||    | ||||||||||||||| |||||||| ||  |  | ||||||||| | |||||||| ||||||||||||||||||||| | |      ||||    | ||          ||  || |||    || ||  ||  | || | |||   |||||  |  | | | | |||       |  |  || ||    | ||||| |     ||| || ||   |  |   | |||
CTGAGAGATGGATTGTTAATCTCATCCGTAGCTCAAAGCTTGATGCCAAAATTGACTCCGAAACTGGAACTGTTATCATGGAACCTAATCATCCAAATGTgtaagttaacattgattactgactcgatggataagggcttttattgcttcctattgtattgtaccattct-gactcagctatgttgatcccttccttt----ccttcatgttgcatgtcatacttttcaagaccgttaatcttatactatatctgcag

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 7
CTGAAAGATGGATTGTGAATCTTATAACGACCTCAAAGCTTGATGCTAAAATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttatagaacagactgctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcag
| || |||||||||||||| || ||    ||||||||||||||||| || ||||||||  |||||||||||||  | ||||| || | ||| || || ||||||||    |||| |  ||        ||| | |||| | |    ||      |  | |||  |||  |   |    |                                                                      
CCGAGAGATGGATTGTGAACCTAATCCGCACCTCAAAGCTTGATGCCAAGATTGATTCTGAGTCAGGAACTGTAATCATGGAGCCTACTCAGCCCAACGTgtaagt----agaataagcttaaa----tctatgatatcattcgtattctacaatctaatcttgtttccgctttatgcag---------------------------------------------------------------------

upper sequence: Vv00s0252g00070.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S363_21V6.2 (Physcomitrella patens), 5'ss of exon 6
CTGAAAGATGGATTGTGAATCTTATAACGACCTCAAAGCTTGATGCTAAAATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttatagaacagactgctggtgttctgtaatattagttacttttatttttacagtctccttttagacctggctatcctttttcttacttttaaagttctatttctgtatccactgcttttaatgttgattttccttgctttcag
|||||||||||||||||||||||||    |   |   | | || || || || |||||||||   || |||||||||||||   |  |  |||||||| |||| ||          || |  |   | | |  | ||||      | ||  || || ||| || | |||||    | |||  |  ||| | || |  | |    ||| |   |||                                  
CTGAAAGATGGATTGTGAATCTTATCCGCAATGCGCGGTTGGACGCCAAGATCGATTCAAAGATGGGCACTGTTGTTATGGGCACACAATATCCAAATATgtatgt---------ggattcttcccggtttagattattg-----tattcgttctaaagtttc-tattaga---agatatgttggttcatcctctgtaggaatcatt-caagatctgta------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544009|gb|CF512241.1|CF512241
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|71888199|gb|DT037254.1|DT037254
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110363505|gb|EC927099.1|EC927099
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110390743|gb|EC955669.1|EC955669
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|351035098|gb|FQ458455.1|FQ458455
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|34543920|gb|CF512152.1|CF512152
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|30302336|gb|CB979130.1|CB979130
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|349827029|gb|FQ421302.1|FQ421302
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110361713|gb|EC925206.1|EC925206
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|45770682|gb|CN006534.1|CN006534
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110422588|gb|EC988915.1|EC988915
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110709660|gb|EE085316.1|EE085316
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCCAATGT                         GTATCAACCAGATTATAGACCACACCAAGG
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAAC-AGATTATAGACCACACCAAGG
EST: gi|30299800|gb|CB976594.1|CB976594
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|30302404|gb|CB979198.1|CB979198
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGANNNNNNNAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|351019002|gb|FQ426501.1|FQ426501
EST:     ATTGATTCANAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|71883037|gb|DT032092.1|DT032092
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110385422|gb|EC949946.1|EC949946
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|46918748|gb|CN548077.1|CN548077
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110701694|gb|EE079554.1|EE079554
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110374343|gb|EC939024.1|EC939024
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110690210|gb|EE067120.1|EE067120
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|26262647|gb|CA813710.1|CA813710
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAATAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|352768500|gb|FQ467456.1|FQ467456
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110428950|gb|EC995434.1|EC995434
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|34543854|gb|CF512086.1|CF512086
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|32459206|gb|CD800380.1|CD800380
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
EST: gi|110415996|gb|EC981946.1|EC981946
EST:     ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGT                         GTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA
genomic: ATTGATTCAAAGTCAGGAACTGTTGTTATGGAACCCAATCATCCAAATGTgtaagtttat ... ttgctttcagGTATCAACAGATTATAGACCACACCAAGGCAGTATCGGGGCGAACCTACAA