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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCCATGATGATGCAAAGTTGTCAATTCCTGCTACTGTTGTTCTTCGGTATATGTTTACTCCTGCTGAAATGAGGgtaatctttatatctcagagagacagagacagagagagggttccttgtggattctaaattttctttttcctgatggtttgataatggtttttatgttact...

Basic information

species Vitis vinifera
transcript Vv00s0220g00010.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G31450.1 (Glycine max), 5'ss of exon 12
GGGGCCATGATGATGCAAAGTTGTCAATTCCTGCTACTGTTGTTCTTCGGTATATGTTTACTCCTGCTGAAATGAGGgtaatctttatatctcagagagacagagacagagagagggttccttgtggattctaaattttctttttcctgatggtttgataatggtttttatgttact-
| || | ||||||||||||  | |||||||| || |||||| | ||||| ||||||||| |||| ||||||||||||||     |||  |  |   |           || | |    |     | ||  ||   | |     |  |  ||   |  | |    |||  |  |   | 
GTGGTCGTGATGATGCAAAAGTTTCAATTCCAGCAACTGTTATCCTTCGTTATATGTTTGCTCCAGCTGAAATGAGGgttggtgttacttaactttgcttgttttcttgatacaattattgcactagaaacttgctataacagtggcc-atacctgcacatcattttggacatggtta

upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G36110.1 (Glycine max), 5'ss of exon 11
GGGGCCATGATGATGCAAAGTTGTCAATTCCTGCTACTGTTGTTCTTCGGTATATGTTTACTCCTGCTGAAATGAGGgt-----------aatctt-tatatctcagagagacagaga-cagagagagggttccttgtggattctaaattttctttttcctgatggtttgataatggtttttatgttact
| || |  |||||||||||  | |||||||| || |||||| | ||||| ||||||||  |||| ||||||||||||||           ||| ||   | | |    || |||   | || |        |   | |  |    |  |    |   |||  ||  |||   |  || |||         
GTGGTCGCGATGATGCAAAAGTTTCAATTCCAGCAACTGTTATCCTTCGTTATATGTTCGCTCCAGCTGAAATGAGGgttggtgttacttaattttgcttgttttcttgatacaattatcacactagaaacttgctataaa----agttgccatacctccccatcattttggacagggttt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384553|gb|EC948997.1|EC948997
EST:     TTCCTGCTACTGTTGTTCTTCGGTATATGTTTACTCCTGCTGAAATGAGG                         GCTGATCCAAATTTACGTTCAGAACTAGAGGGAGATGTACAAGAGGAATGC
genomic: TTCCTGCTACTGTTGTTCTTCGGTATATGTTTACTCCTGCTGAAATGAGGgtaatcttta ... atgtttatagGCTGATCCAAATTTACGTTCAGAACTAGAGGGAGATGTACAAGAGGAATGC