Sequence
atgc intronic sequence ATGC exonic sequenceAAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctgattcttatactcagctgttgcacatttttgtaatctcatttaaatgtcaatatctataaatattttgtttttgtacttgaggaacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G21720.1 (Glycine max), 5'ss of exon 8
AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctgattcttatactcagctgttgcacatttttgtaatctcatttaaatgtcaatatcta-taaatattttgtttttgtacttgaggaacct-
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AAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCATGAGgttgtcaatccttaaaccttttatcacttaattggt-tatttgtgatccaaagtcaattttcgaattgacttcacttactgttccttta-ttggtttttgta
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G03040.1 (Glycine max), 5'ss of exon 7
AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctgattcttatactcagctgttgcacatttttgtaatctcatttaaatgtcaatatctataaatattttgtttttgtac---ttgaggaacct--
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GAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGGCACACATGCTGGTGCAAATGCAATTCACAATGAGgttgttaatcctttatctctgtattaattgat-cacattca-gttggatcattttgtgatccatgtgagt---tcttttgtgacaaaacatatctaggagtttac
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G38450.1 (Glycine max), 5'ss of exon 7
AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctgattcttatactcagctgttgcacatttttgtaatctcatttaaatgtcaata-tctataaatattttgtttttgtacttgaggaacct--
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AAAAGAGGGATCAACATGCTTTTTGTATTGGGTGGAAATGGCACACATGCTGGTGCCAATGCAATTCACCACGAGgttgttaatccataaaccttttatcacttaactggt-tatttgtggtccaggttga--gtcagtaatgtggaaacttttcattgaaaattctggaaagtcaat
upper sequence: Vv00s0199g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G04570.1 (Glycine max), 5'ss of exon 8
AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctg-attcttatactcagctgttgca--catttttgtaatctcatttaaatgtcaatatctataaatattttgtttttgtacttgaggaacct---------------------------------------------------------------------------------------------------------------
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GAAAGAGGGATCAACATGCTCTTTGTGTTGGGTGGAAATGACACACATGCTGGTGCAAATGCAATTCATAATGAGGTTATCAATCCTTTATCTCTgtattaattgatcacattcagttggatcattttgtgatcaattgatgaaatatatatattttgtttttgcatgaattaaatttcaaatcaaatataagaaagaaaatgtaagcttgtggaatagctcatttataatttctccccaaacttaaccaaaaggtattttaaatttttggtctatgcctatcgtctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71859409|gb|DT008464.1|DT008464EST: TGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAG TGCCGTAAACGGCGTATGAAGGTGGCAATAGTTGGTGTTCCAAAAACCATA
genomic: TGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagc ... tggcttgcagTGCCGTAAACGACGTATGAAGGTGGCAATAGTTGGTGTTCCAAAAACCATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAGAGGAATCAACATGCTTTTTGTGTTGGGTGGAAATGGTACTCATGCTGGTGCCAATGCAATACACAATGAGgtagtcaagcctgattcttatactcagctgttgcacatttttgtaatctcatttaaatgtcaatatctataaatattttgtttttgtacttgaggaacct
- - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggaac