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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattattttccctgtggttactcggtgtcacatagtaacagccactatttattctctttcattttatatgaaacagcactgcacaagtatgtgaaaa...

Basic information

species Vitis vinifera
transcript Vv00s0187g00170.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G44410.1 (Glycine max), 5'ss of exon 8
CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattattttccctgtggttactcggtgtcacatagtaacagccactatttattctc------tttcattttatatgaaacagcactgcacaagtatgtgaaaa
|   ||||||||| || ||||||||||||||| |||| || ||  |||||||| |||||||| |  | | |   ||   ||  ||    |   | || | ||  || |    ||| ||      || |||    | |  | |  |  | | |  |    |     
CTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGgtaca--aatatgagtggtatttttcataattttaaag-atcaatcattgaaaattatcatgtgattccatgacttgttgatccccctttcccccggccatac---

upper sequence: Vv00s0187g00170.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G08370.1 (Glycine max), 5'ss of exon 5
-CCACAGATGATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtata-ttattt-tccctgtggtt-actc--ggtgtcacatagtaacagccactatttattctctttcattttatatgaaacagcactgcacaagtatgtgaaaa
 |   ||||||||| || ||||||||||||||| |||| || ||  |||||||| |||||||| | |||    |    |||||| ||||  | | |  |||| |       |  | | |||     | |||   |||||  ||    |  ||     |       
GCTGTAGATGATACACAACGTATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAggtacaattacaaatatgagtggtttactctagatttttcataattttgaatatcaatcattgaaaattatt--gtatgattcacttgttgactcccctccc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30136299|gb|CB921637.1|CB921637
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTG
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTG
EST: gi|294966792|gb|GW837811.1|GW837811
EST:     ATACCCAGCGTATGATGCAAATGGGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCT
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCT
EST: gi|32250235|gb|CD716054.1|CD716054
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATG
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATG
EST: gi|110407602|gb|EC973208.1|EC973208
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110428045|gb|EC994506.1|EC994506
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|32456961|gb|CD798135.1|CD798135
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110417816|gb|EC983901.1|EC983901
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110712100|gb|EE089333.1|EE089333
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGGC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGG-C
EST: gi|110423024|gb|EC989359.1|EC989359
EST:     GCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: GCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|32457083|gb|CD798257.1|CD798257
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110428615|gb|EC995092.1|EC995092
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|27582229|gb|CB004924.1|CB004924
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|352764273|gb|FQ471253.1|FQ471253
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110429192|gb|EC995681.1|EC995681
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|27580483|gb|CB003178.1|CB003178
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110411782|gb|EC977505.1|EC977505
EST:     GTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: GTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|110728851|gb|EE104791.1|EE104791
EST:     ATACCCAACGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAAAAAGA-AGTCTCGACATATTTAA-CATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|30125541|gb|CB910880.1|CB910880
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
EST: gi|30136533|gb|CB921871.1|CB921871
EST:     ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAG                         AGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC
genomic: ATACCCAGCGTATGATGCAAATGAGTGGGTTCGGCGTTGATCCTACAAAGgtatattatt ... ttcttgtcagAGCTTGGGTGCTGAGAAAGACAGTCTCGACATAGTTCAGCATGAATGGGCC