Sequence
atgc intronic sequence ATGC exonic sequenceGTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttccttatttcttatcttctatgacttcaattgcattaataatcatatggaattttcctcttttataccatataatgtttctaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g57350.2 (Oryza sativa), 5'ss of exon 7
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttccttatttcttatcttctatgacttcaattgcattaata-atcatatggaattttcctc-ttttataccatataatgtttctaa-
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GTTTGGTGGCTGATATAGATATTGAGTCTGAGAAGTACAGGTGGATGGGAAGTGCACGCTTTGATTTCTATgtatgtatgcttttgttttca-acgttttcctttttatt-tttcaatt-ctttactatatcatatctgtcatcaatggttactcatctacttgcacctttaca
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 7
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttc--cttatttcttatcttctatgacttcaattgcattaataatcatatggaattttcctcttttataccatataatgtttctaa
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GTCTGGTGGCTGATGTTGATATTGAATCGGAGAAGTATAGGTGGATGGGAAGTGCTCGCCTTGAATTTTATgtatactttctatccttaaagcttgtaccaacctttttttaaaaaaacttatatcaactacttgattttatttttcatatctatatgcttctctgtcctt--
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G07340.1 (Glycine max), 5'ss of exon 7
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttccttatttcttatcttctatgacttcaattgcattaataatcatatggaattttcctctttta--taccat-ataatgtttctaa
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GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAGTACCGGTGGATGGGAAGTGCTCGTCTAGATTTTTATgtcagtagtc---cattttataacttttgcatgtttattaatgatgtttttctttcacttatatgtgtgtctcttttatggattatcgttgcaattattttct
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G06300.1 (Glycine max), 5'ss of exon 7
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgt----atgtcctgaaatatttccttatttcttatcttctatgac-ttcaattgcattaata-atcatatggaattttcctcttttataccatataatgtttctaa
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GTCTGGTTGCTGATATTGATATCGAGTCTGAAAAGTATAGGTGGATGGGAAGTGCTCGTATTGATTTTTATgttagtaagccatgtaataagtaccatgacatgcttgtttatgatgcttttcttcattgttgtgtccttttatatgaattatctttgcatta-gttatctt-----
upper sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G31980.1 (Glycine max), 5'ss of exon 8
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttccttatttcttatct-tctatgacttcaattgcattaataatcatatggaattttcctcttttataccat-ataatgtttctaa
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------------ATATTGACATTGAGTCTGAAAAGTACCGGTGGATGGGAAGTGCTTGGCTAGATTTTTATgttagtaatccattttataacttttacatgtttatttatgatgtt--tttctttcacttatatgtgtgtctcttatatggattattgttgcaattatcttctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721143|gb|FC070385.1|FC070385EST: TTGAGTCTGAAAAATATAGGTGGATGGGAAGCGCTCGTTTAGATTTCTAC GCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTT
genomic: TTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctg ... tattattcagGCTCTGCAACGAATATTGCATTTGAGGAAGTATAATGGATGTATATCTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTGGTGGCAGATATTGACATTGAGTCTGAAAAATATAGGTGGATGGGAAGTGCTCGTTTAGATTTCTACgtatgtcctgaaatatttccttatttcttatcttctatgacttcaattgcattaataatcatatggaattttcctcttttataccatataatgtttctaa
- - - - - - - - - - - - - - - - - - - GGTGGA