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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAAAACAATCCCATATTTTCAATTCGGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattacttattttcatctgaactattgatttgtaactgcag

Basic information

species Vitis vinifera
transcript Vv00s0181g00140.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0181g00140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 6
ATTCCAAAACAATCCCATATTTTCAATTCGGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattac-ttattttcatctgaactattgattt--gtaactgcag
 |||||||||| || ||| | |  | | | ||||| ||||||||||| || ||||||||||||||||  ||| |||||||  | ||| ||||  ||||||||||||| |  | ||||||  ||  ||| || ||     |   |  |  | |||| ||  |  ||  | ||||  || |||||||||  |||   | | |||||
CTTCCAAAACAGTCGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTCGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtaaacccc--aaatactt--taagatagtc-cattttgtatgtgttgtgtttctttttattgtatgtcatttatatttgaactattattttaaattattgcag

upper sequence: Vv00s0181g00140.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G06330.1 (Glycine max), 5'ss of exon 1
ATTCCAAAACAATCCCATATTTTCAATTCGGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattacttattttcatctgaactattgatttgtaact--gcag
 |||||||||| |  ||| | |  | | | ||||| ||||||||||| || ||||||||||||||||  ||| |||||||  | ||| ||||  ||||||||| ||| |  | ||||||  ||  ||| ||       | |  |  |  | |||| ||  | |   | ||||  || ||||||| |  |||  |  |  ||||
CTTCCAAAACAGTTGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTTGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtatacccc--aaatactt--taagatagtcctttttgtatg-tgttgtgtttcttttattgtatgtcatttatatttgaactagtattttaaatttttgcag