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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTAGAGCAGCCATTGGAGACTATGCTTGGTCTGTTGGGGATAGAGTTGATGTATGGGTACAAAATTGGTATGTCAATATGATACTAAATATTATGTTTgtgggatgggataacaatcataagccagaaatttcaaggaatgaaaatcatgataaattgtactaaataaataataaataaaacataataaaaacaaataaaagatgataaaaatag

Basic information

species Vitis vinifera
transcript Vv19s0176g00090.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0176g00090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G03650.1 (Glycine max), 5'ss of exon 10
-------------------------------ACGTAGAGCAGCCATTGGAGACTATGCTTGGTCTGTTGGGGATAGAGTTGATGTATGGGTACAAAATTGGTATGTCAATATGATACTAAATATTATGTTTgtgggatgggataacaatcataagccagaaatttcaaggaatgaaaatcatgataaattgtactaaataaataataaataaaacataataaaaacaaataaaagatgataaaaatag
                               ||||||||| || || ||||| ||||| ||||||||||||||||||||||||| |||| ||||| |  ||| ||   ||||   |||   | || |  ||  |  |||   | |    |||       | |      | | | |   |     || ||| ||     |  |                                              
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatag-act---tcttttaatta-gctatgtattgatggccatttcatcaataccctttgaagttattgtgtgcgtatattataacttcttcaccg-------------------------------------------

upper sequence: Vv19s0176g00090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA01G41730.2 (Glycine max), 5'ss of exon 6
-------------------------------ACGTAGAGCAGCCATTGGAGACTATGCTTGGTCTGTTGGGGATAGAGTTGATGTATGGGTACAAAATTGGTATGTCAATATGATACTAAATATTATGTTTgtgggatgggataacaatcataagccagaaatttcaaggaatgaaaatcatgataaattgtactaaataaataataaataaaacataataaaaacaaataaaagatgataaaaatag
                               ||||||||| || || ||||| ||||| ||||||||||||||||||||||||| |||| ||||| |  ||| ||   ||||   |||   | || |  ||  |  ||    | |    |||       | |      | | | |   |  || || ||| ||  |  |  |  ||                                          
ATACTTTACAATATGAAGGAACAAGAAAGAGACGTAGAGCTGCTATGGGAGATTATGCATGGTCTGTTGGGGATAGAGTTGATGCATGGATACAAGAAAGgtttgcttatatag-act---tcttttaatta-gctatctattgatggccatttcttcaataccctttgaagttattgt-gtg-tatattataacatcttcaccatt-----------------------------------------