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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggcccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaactataatggaaag

Basic information

species Vitis vinifera
transcript Vv19s0090g00610.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 7
AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggc--ccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaactataatggaaag--
| ||| || ||| | |||||| | |||||||||||||||||||| ||||| || |||||||| ||||||||| || | |    ||  |||| | ||    ||  || | |     | ||   |      ||  |   |  |   |  | |       ||||| | |  |   
ATTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgtataaagttcaatgcttccctgtgttcccttcccctcccaacaaatgtgacatcaataattgttttattgtgcttactgtgtgacccctatatttgtcacag

upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 6
AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggcccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaa------ctataatggaaag--
| ||| || ||| | |||||| | |||||||||||||||||||| ||||| || |||||||| ||||||||| || |||    ||  |  |   ||   |   |||  |  |  |   | ||    |       || |||| |||  |||||         ||||| | |  |   
ACTGATGTCTTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAGACTATATACCACAAACAGgtataaagctcaatgcttccctgcatt---ccctttccctcccaataaatgtgacatcaataattgtttttattgtgcttactgtgtgacccctatatttgtcacag

upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G10850.1 (Glycine max), 5'ss of exon 6
AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggcccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaactataatggaaag
||||| || ||| | |||||| | ||||||||||| |||||||| || || || |||||||| ||||||||| || |||    ||  |  | | ||      |  |||  |   |     |    | ||  | | |  ||| |||   | |   |   |  |   |  
AGTGATGTATTTTTAATTTGCTCAAATGCAATGCAGTACAATGCACCGGAGACTATATACCACAAACAGgtataaagctcaatgcttccctgtgttccctcccaacaaacgtgatatcaataattgttttattg-tgcttactgtctgtcccctatatttgtcacag-

upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G10890.1 (Glycine max), 5'ss of exon 5
AGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGgtacaaggcttttggcccctttattttaatcatcttcaattgcttttgttttgcgggcttagtcggtatttaatgttattactaaactataatggaaag
||||| || ||| | |||||| | ||||||||||| |||||||| || || || |||||||| ||||||||| || |||       | |  || ||   | |   |||      |   |        ||     ||  ||| |||   | |    ||||     |   
AGTGATGTATTTTTAATTTGCTCAAATGCAATGCAGTACAATGCACCGGAGACTATATACCACAAACAggtataaagctc--aattcttccatgtt--cccttcccaacaaacgtgagtcaataattttttattgtgcttattgtctgtccc---ctatgtcaca---