1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGAAAGTCAACATCTTGTGTTGCTTTCATTCTGGAAATGTATAAGGAGGCAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACGgtgagtcaaagcaatacagagtttgctagtcctgatgaaaaaaagtcactatttagcattatcatgatatattttggttatcagtagataaatgttatga...
species | Vitis vinifera |
transcript | Vv19s0090g00130.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACG ATAAAAGATGCATACACACTGAANNNNNNNGAAAATAATTCAAGCCGCCTGEST: gi|30133915|gb|CB919254.1|CB919254
genomic: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACGgtgagtcaaa ... aaaaatgcagATAAAAGATGCATACACACTGAATTTTTTTGAAAATAATTCAAGCCGCCTG
EST: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACG ATAAAAGATGCATACACACTGAGNNNNNNNGAAAATAATTCAAGCCGCCTGEST: gi|30131764|gb|CB917103.1|CB917103
genomic: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACGgtgagtcaaa ... aaaaatgcagATAAAAGATGCATACACACTGAATTTTTTTGAAAATAATTCAAGCCGCCTG
EST: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACG ATAAAAGATGCATACACACTGAGNNNNNNNGAAAATAATTCAAGCCGCCTG
genomic: CAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACGgtgagtcaaa ... aaaaatgcagATAAAAGATGCATACACACTGAATTTTTTTGAAAATAATTCAAGCCGCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAAGTCAACATCTTGTGTTGCTTTCATTCTGGAAATGTATAAGGAGGCAGGATTATTTGGTCCAAGTGCTAGCTCTATTCAAGTAACTGAGTTCACGgtgagtcaaagcaatacagagtttgctagtcctgatgaaaaaaagtcactatttagcattatcatgatatattttggttatcagtagataaatgttatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataaa