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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcactggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttctctttatcttgagataccccaatttaacaagatt...

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G128114_T03 (Zea mays), 5'ss of exon 5
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcactggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttctctttatcttgagataccccaatttaacaagatt-----
 ||    || || || |  | ||||||||| ||||| || ||||||||||||||||||||  || |  || |||||||| |  || | ||| | |||||||  |    |||    ||| |||     ||      |  ||||| |   | |    ||    |  | |  ||| |||||  ||       || |  | |||     
TGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGCATATATGGTGATATAATTCCTCCAACTTTATCTGATCGTAGATTGTTGGTTCTGAAGCAGgcaatatgctg----ataccttttccttactttgttgctgatg-actcactctatttccgttcattttattagcttgatgtatattttgtttatgatatttcatc

upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 6
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagc-actggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttct-ctttatcttgagataccccaatttaacaagatt
||||| ||||||||||||  | || ||||||||||||||||||||||| |||||||||||  |||| ||| ||||||| ||  |  ||||| |||||||||| ||     || |||| || || |||  | |    || ||    || |   |  || ||          || ||  || |||  |   |  |||    |  
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAATTCCTGCACCTCTATCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtgtcttaaatttttatttcagaagttttctgggataactttatacctaaagtgcaggaatttcatgatgggatgtctgtacctaatgcaa--

upper sequence: Vv19s0085g00880.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 6
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagc-actggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttct-ctttatcttgagataccccaatttaacaagatt
||||| ||||||||||||  | || ||||||||||||||||||||||| |||||| ||||  ||||  |  ||||||| ||  |  ||||| |||||||||| ||     |  |||| || || |||  |      || ||    || |   |  || ||      |   |||||  || |||  |   |  | |    |  
GGCTGGCTTTATTGAGTTTGCAGCTGAGGAGGCAAAACGTATATATGGGGATATAGTTCCTGCACCTTTTTCTGATCGGCGATTATTTGTTCTAAAGCAGgtaaacttggtatcttaaatttttatttcagcagttttctgggataactttatacctaaagtgaagcaattttatgatgggatgtctgtacctgatgtaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825250|gb|FQ417971.1|FQ417971
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349827094|gb|FQ421367.1|FQ421367
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351031176|gb|FQ445003.1|FQ445003
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351022976|gb|FQ428885.1|FQ428885
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110688026|gb|EE066106.1|EE066106
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110720877|gb|EE097183.1|EE097183
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351042224|gb|FQ442691.1|FQ442691
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351028680|gb|FQ446353.1|FQ446353
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351026695|gb|FQ436348.1|FQ436348
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351012435|gb|FQ427036.1|FQ427036
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351023404|gb|FQ432787.1|FQ432787
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGTCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351022813|gb|FQ428722.1|FQ428722
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349827719|gb|FQ422587.1|FQ422587
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351012851|gb|FQ430414.1|FQ430414
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110712816|gb|EE088195.1|EE088195
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351024564|gb|FQ426373.1|FQ426373
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|77587321|gb|DV222801.1|DV222801
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349823645|gb|FQ415055.1|FQ415055
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351014822|gb|FQ438022.1|FQ438022
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349829516|gb|FQ420048.1|FQ420048
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTTGGA-CTTTCCATTGGCTAT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTT-GGAACTTTCCATTGGCTAT
EST: gi|351019842|gb|FQ439659.1|FQ439659
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTACGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|30300500|gb|CB977294.1|CB977294
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351014217|gb|FQ434806.1|FQ434806
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|33405914|gb|CF211541.1|CF211541
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTGAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351021635|gb|FQ430522.1|FQ430522
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCGATTACTCCCTGGAACTTTC-ATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|33407740|gb|CF213367.1|CF213367
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110711777|gb|EE088642.1|EE088642
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAAGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110711744|gb|EE088569.1|EE088569
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|161718701|gb|FC066339.1|FC066339
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349832930|gb|FQ423052.1|FQ423052
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|34543124|gb|CF511356.1|CF511356
EST:     ATATCATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|71861762|gb|DT010817.1|DT010817
EST:     ATATAATTCCATCACCACTTGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTT
EST: gi|110717484|gb|EE093391.1|EE093391
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAA-GCAG                         CCTGTAAGTGTTGTTGGTGCAATTACTCCTTGGAACTTTC-ATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351033615|gb|FQ447774.1|FQ447774
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|71856998|gb|DT006053.1|DT006053
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110377270|gb|EC942333.1|EC942333
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110685428|gb|EE062138.1|EE062138
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351027861|gb|FQ448431.1|FQ448431
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTGTG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351014497|gb|FQ437499.1|FQ437499
EST:     ATATAATTCCATCACCACTAGCTGATCGCCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349824141|gb|FQ417528.1|FQ417528
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351022046|gb|FQ437833.1|FQ437833
EST:     TATAAATTCCATCACCACTAGCTGATCGTCCGCTGCTTGTTTTAAAGCAG                         CCTGGTAG-TGTTGTTGGTGCAATTACTCC
genomic: TATAA-TTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTG-TAGGTGTTGTTGGTGCAATTACTCC
EST: gi|110703160|gb|EE079765.1|EE079765
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAAGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110711357|gb|EE087747.1|EE087747
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAA-GCAG                         CCTGTAAGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110711773|gb|EE088638.1|EE088638
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAA-GCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351015664|gb|FQ427149.1|FQ427149
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349827446|gb|FQ422314.1|FQ422314
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110700048|gb|EE077644.1|EE077644
EST:     ATATAATTCCATCACCACTAGCTGATCGTCNGCTGCTTGTTTTAAAGCAG                         CCTGTANGTGTTGTTGGTGCAATTACTCCTTGGGACTT-CCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|161710254|gb|FC060645.1|FC060645
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTTCTTGTTTTAAAGCAG                         CCTGTAAGTTTTGTTGGTTCCAATACACTCCTTGAGAACTTTCCATTGGCT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGC-AATT-ACTCCTTG-GAACTTTCCATTGGCT
EST: gi|110713914|gb|EE090252.1|EE090252
EST:     ATATAATTCCATCACCACTAGCTGATCGTCNGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351012714|gb|FQ430277.1|FQ430277
EST:     ATATAATTCCATCACCACTAGCTGATCGTTGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349828464|gb|FQ417206.1|FQ417206
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110719472|gb|EE094631.1|EE094631
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAA-GCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351024107|gb|FQ423530.1|FQ423530
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351021887|gb|FQ437674.1|FQ437674
EST:     ATATAATTCCATCACCACTAGCTGATCGTCAGCTGCTTGTTTTAAAGCAG                         CCTGTAAGTGTTGTTGGTGCAATTACTCCTTGAAACTTTCCAT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCAT
EST: gi|351028364|gb|FQ427260.1|FQ427260
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         TCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351016508|gb|FQ423935.1|FQ423935
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110712898|gb|EE088347.1|EE088347
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAN                         CCTGTAGGTGTTGTTGGTGNCA-TTACTCCTTGGGACTTTCCATTGGCTAT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTG-CAATTACTCCTTGGAACTTTCCATTGGCTAT
EST: gi|349832403|gb|FQ420964.1|FQ420964
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACCTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|349831123|gb|FQ420793.1|FQ420793
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|110719810|gb|EE095263.1|EE095263
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAA-GCAN                         CCTGTAGGTGGTGTTGGGTGCA-TTACTCCTTGGAACTTTC-ATTGGCTAT
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGG-TGCAATTACTCCTTGGAACTTTCCATTGGCTAT
EST: gi|161712950|gb|FC062076.1|FC062076
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|351033667|gb|FQ462197.1|FQ462197
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAAC-TTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
EST: gi|352763959|gb|FQ465409.1|FQ465409
EST:     ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAG                         CCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG
genomic: ATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcact ... tcttttgcagCCTGTAGGTGTTGTTGGTGCAATTACTCCTTGGAACTTTCCATTGGCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTGCCTTTATTGAGTTCTCTGCAGAGGAGGCAAAACGTATATATGGTGATATAATTCCATCACCACTAGCTGATCGTCGGCTGCTTGTTTTAAAGCAGgtgaagcactggcttatatcttaattctatacaagttttgatgcaaataattgtcttaaacttttctctttatcttgagataccccaatttaacaagatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga