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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTGTTTGGGATACCTGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTGACCTCTCAAgtaattccccaattcagtaaatgatactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcag

Basic information

species Vitis vinifera
transcript Vv19s0027g01200.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G10060.1 (Glycine max), 5'ss of exon 6
TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTGTTTGGGATACCTGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTGACCTCTCAAgtaattccccaattcagtaaatga-tactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatat---ccttaggaaaataaagcatgctgaaaattgaccttgttgacattcttaatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcag
|||||||||||| || || |||||  || |||| |||||||| ||||  |||||||||||||| || || ||||||| ||||||||| || |||||||| ||| |||    || || | ||  |  |   |    | || | |  || |||||    ||      |  |   | | ||| | |||| |  |   | |   |||| | ||  ||  |     || |  |  ||     |||   | ||| || ||  || | ||  || ||  |||      ||| ||| |||
TTGGGCTTTTGGCCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGgtatttcatggatacattcaacaagcatccttcaatgttgtctcttctttttcctggttaccacatgtgatgtaactacaagaatttacgtagtcatcttgaaagtcaaa-atattatttgtttagttcttttgtgatctct-tctctaatgta--ttgcatg--tgcttgctttttg-attttatatacag

upper sequence: Vv19s0027g01200.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G52890.1 (Glycine max), 5'ss of exon 8
TTGGGCTTTTGGGCTTGGATTGGAACGGCTAGCAATGGTTCTGTTTGGGATACCTGATATTCGGCTTTTCTGGTCAACTGATGAGCGGTTGACCTCTCAAgtaattccccaattcagt-aaatgatactgtattttattttattctccttttctgtctttgtggttaagtaatcattaccaaaattgatatccttaggaaaataaagcatgctgaaaattgaccttgttgacattct-taatgtctgatttaggttccctgaatgtttaatttaaatgctttgtatgcag
|||||||||||| || || |||||  || |||| |||||||| ||||  |||||||||||||| || || ||||||| ||||||||| || |||||||| ||| |||    ||    | || |   |   |    |  | | |  || |||||    ||      |  |   | | ||| | |||| ||    | ||  |  |  || || |  || |||  |  | | |   || | | || |||  | ||  |    ||  |||||   ||      ||| ||| |||
TTGGGCTTTTGGTCTAGGGTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCTGATATTCGTCTCTTTTGGTCAAATGATGAGCGATTTACCTCTCAGgtatttcatggatatgttcaactagcatccttcaatgctgtctcttctttttcccggttgccatatgtgatgtgactacaagaatttatgatgt-agtcatcttgagaat-caaaatattatctgtttagttcttttgtgatctcttctctaa-tgtattgcttgtttgccttttg-attttatatacag