1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGCTGCCCACCTCACGGGGATACATAGTGCCATCAAGATGCTAAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtcttttttgtttatttagaaatttgaatttgttcaaagtagtggaagagaggataggattttctctaagaaaaaacatagaggaaagaactaa...
species | Vitis vinifera |
transcript | Vv19s0015g01950.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAG GGGATATTCCTTGTGAAAATTCACTGCTGAGGCAAGTATCAAGTCTTTTACEST: gi|110363635|gb|EC927237.1|EC927237
genomic: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtct ... tttgatgtagGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTAC
EST: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAG GGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTACEST: gi|110368023|gb|EC931983.1|EC931983
genomic: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtct ... tttgatgtagGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTAC
EST: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAG GGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTACEST: gi|110684768|gb|EE062427.1|EE062427
genomic: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtct ... tttgatgtagGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTAC
EST: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAG GGGATATTCCTTGTGAAAATTCACTGCTGAGACNAGTATCAAGTCTTTTAC
genomic: AAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtct ... tttgatgtagGGGATATTCCTTGTGAAAATTCACTGCTGAGACAAGTATCAAGTCTTTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGCCCACCTCACGGGGATACATAGTGCCATCAAGATGCTAAATAGCAGAATCCGTGTTCTTCATCATTATCTGCTTGCTATGCAAAAAGgtgtatgtcttttttgtttatttagaaatttgaatttgttcaaagtagtggaagagaggataggattttctctaagaaaaaacatagaggaaagaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaa