Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGgtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcag

Basic information

species Vitis vinifera
transcript Vv19s0015g01750.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G12500.1 (Glycine max), 5'ss of exon 7
TATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGgtacttggtgtttgcttatactagcaatggaacttgtcaattc-tgcatatgaac-ctaactcccat-tg--cattttttaattttcag
 | |||||||||||||| ||||| || ||  | || | ||||||||| |||||||| ||||||||||| |||||||||||||   || | |||||  | || ||| ||| | || |   |        |  |||  || ||||   | | || |   || ||    |||| | ||||| ||
CACCTAGATCGACCTGGTGTTAGCTTTTGCACGAGAACAACTTATGATGATAATGCTATCACCAATGCCATTGAGATTTATGATTGTCCTAGgtatatagt-tttccttctcctggtggttttgtcatttgatttatggatatcggcaccaagtttaatgtgattgttttctgatttttag

upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G55680.1 (Arabidopsis thaliana), 5'ss of exon 7
TATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGgtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcag
 |||| ||| ||||||| || || || |||||  | |  |||||||| |||||||| || |||||||||||||||||||||  ||   ||||||| |||   | | ||| | || |   | | | ||| ||| |   |   |  | || | |    |    | | |   | | |||
CATCTTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGgtatttg-catgt-cttttgcttgaggttgtatttgccaacttgtctcttctaactgattttt-tgatgtctgtctgtctgcag

upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G13340.2 (Arabidopsis thaliana), 5'ss of exon 7
TATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGgtacttggtgtttgcttatactagcaatggaacttgtcaattctgcatatgaacctaactcccattgcattttttaattttcag
 |||| ||| |||| || || || || || ||  | || |||||||| |||||||| || ||||||||||||||||| ||   ||   ||||||   || |  |   ||   | |    |  |  ||      |  |  |     | |    |  | |      ||   ||| |||
CATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATGATAATGCTATAACCAATGCTATTGAGATCTACAACAAACCCAGgtttgtgctagtcctttgcccgaaaggtccacattaagttgttagagtcactgcttgtaacttagttttggcttctgtttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328304|gb|CD011566.1|CD011566
EST:     GATTTATGCCAGTTCCAG                         TGGTGCAGTTCACTTCAGTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
EST: gi|32249634|gb|CD715453.1|CD715453
EST:     GATTTATGCCAGTTCCAG                         TGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
EST: gi|32270441|gb|CD719600.1|CD719600
EST:     GATTTATGCCAGTTCCAG                         TGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT
genomic: GATTTATGCCAGTTCCAGgtacttggtg ... taattttcagTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTT