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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGgtgccttctcttttcatgttatttcttttactgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacag

Basic information

species Vitis vinifera
transcript Vv19s0015g01160.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01160.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 7
GGTATGAAAAATTTTACTCGAACTGCTGCAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGgtgcctt-ctcttttcatgttatttcttttac---tgttgtatttgtttttaattgttcaccatctctactaaaaataataattattattattgtcacatgcatttacag
|| || || || ||||| | ||| |||||||||||||||||||||||| | ||||||||||| | ||||||||||||||| | |  || | |  || |||  |||  ||      |   ||   ||   | |||||     ||   |    |  |   |                             
GGAATTAAGAACTTTACACCAACAGCTGCAAATCTTGTGGCTGCCATGTCGAAGATAGACAACAGTTACTACCCTGAGgtacttgactttctcaattttacatctcatatgttcttcacatgcattcccagttgtttgaagtcatcatattattttgcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110690338|gb|EE067360.1|EE067360
EST:     CAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAG                         ACACTACATCGAATGTTTGTTGTCAATGCTGGTCCTGGTTTCAAGAAGATG
genomic: CAAATCTTGTGGCTGCCATGGCTAAGATAGACAATAATTACTACCCTGAGgtgccttctc ... gcatttacagACACTACATCGAATGTTTGTTGTCAATGCCGGTCCTGGTTTCAAGAAGATG