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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatgttatttttcttgctagtgttattattgtatttttaatagttatgtggattgttccaatgaatctgacccattgtttagattggttttgct...

Basic information

species Vitis vinifera
transcript Vv19s0014g05210.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G148924_T03 (Zea mays), 5'ss of exon 6
GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatgttatttttcttgctagtgttattattgtatttttaatagttatgtggattgttccaatgaatctgacccattgtttagattggttttgct
||||| || |||   || ||  | ||  |||| |||||||| ||||||||||| || || || |||||||||||||||   | | | || ||  |    | |  | ||  ||| || ||   | || || ||  ||   ||||||    || | ||                    
GACTTCCATCCTAGTGATATTGAACGTTTTGCAAGTTGTGGCATGGACAACACTGTGAAAATCTGGTCAATGAAAGgttagaaa-gctactt--caaagttgcttcatatttgcatgttgcgt-gtcat-tgagtt-caccaatg---ttgtcgcag-------------------

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G118205_T01 (Zea mays), 5'ss of exon 7
GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatgttatttttcttgctagtgttattattgtatttttaatagttatgtggattgttccaatgaatctgacccattgtttagattggttttgct
||||| |||||| | ||  |        |||| |||||||| |||||||| || || || ||||||||||||||||||     |   || |||     ||||  | ||  ||  |||||   | ||    || ||     | |  ||| |  || || |||   |  |        
GACTTCCACCCTACCGAGGTTGGGATTTTTGCAAGTTGTGGCATGGACAATACTGTGAAAATTTGGTCAATGAAAGgtttggga-actactttaa--actagcttcatgtttacattttgtgttgtatgttgcatatcatcgacaaatattgccaat-gttgtcacag--------

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G20740.1 (Arabidopsis thaliana), 5'ss of exon 6
GACTTTCACCCTTCAGACATATATCGCATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgta-------gcacatgttatttttcttgctagtgttattattgtatttttaatagtta---tgtggattgttccaatgaatctgacccattgtttagattggttttgct
|| ||||| || || || || || ||| |||| |||||||||||||||| |||  |||| || ||||||||||||||||       |||||| || |  |         | |||  |     |||   | |  |    ||||| | |||   ||||   |  |  ||| ||| | |   | | |  
GATTTTCATCCGTCTGATATTTACCGCTTTGCTAGTTGTGGTATGGACACCACTATTAAAATATGGTCAATGAAAGgtacgatcgagcacatattgtaataaacttccattttaaaaaaccttttgagaaaaatggcttgtggttcgtttgtatgatctt--cttattctttggctgtctatag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719190|gb|FC065436.1|FC065436
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCAATCT
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCA-TCT
EST: gi|351053554|gb|FQ459301.1|FQ459301
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
EST: gi|351036699|gb|FQ457412.1|FQ457412
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
EST: gi|110378718|gb|EC943862.1|EC943862
EST:     GCGAGTTGT-GTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: GCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
EST: gi|351043856|gb|FQ452650.1|FQ452650
EST:     ATTGCGAGTTGTGGTAATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: ATTGCGAGTTGTGGTA-TGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
EST: gi|352791431|gb|FQ481010.1|FQ481010
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
EST: gi|294965480|gb|GW839051.1|GW839051
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGA
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGA
EST: gi|351033874|gb|FQ447912.1|FQ447912
EST:     CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAG                         AATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA
genomic: CATTGCGAGTTGTGGTATGGACAACACCGTTAAGATTTGGTCAATGAAAGgtagcacatg ... gctgttgcagAATTCTGGACGTATGTGGAGAAATCTTTCACATGGACGGATCTTCCATCTA