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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttgggctgtttctaaatattgggtcatgtatgttcttttacaaggtacaaatgccataatccatccaaattattttcccattaactctcttcccg...

Basic information

species Vitis vinifera
transcript Vv19s0014g02670.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830124|gb|FQ420384.1|FQ420384
EST:     GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: gi|351032346|gb|FQ461599.1|FQ461599
EST:     GAGCGGTTCCGGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: gi|351045262|gb|FQ451710.1|FQ451710
EST:     GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: gi|349827500|gb|FQ422368.1|FQ422368
EST:     GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: gi|351029582|gb|FQ427422.1|FQ427422
EST:     GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
EST: gi|71876759|gb|DT025814.1|DT025814
EST:     GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAG                         AAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT
genomic: GAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttggg ... catcttgcagAAAAGACAAGGTCAGTCCAATTCGAAGAGCCGGAGTGAGAAGTTCAATCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAAAGGGCCAGAGACTTGACCATGAAAGGAAAGGAATAAGAGAGTCTCGAGCGGTTCCAGCACCTGATGCCAATGCTGAATTAGTCCTGTCAATGCAGgtaacttgggctgtttctaaatattgggtcatgtatgttcttttacaaggtacaaatgccataatccatccaaattattttcccattaactctcttcccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc