Sequence
atgc intronic sequence ATGC exonic sequenceACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACCATAGCAGTGATCCAAGCTGGCCATGGCCTTCTTCAGCTTGGCTCTTGCAAGATCgtgagta-cagctatatat-tgctccctctatttttt----------taatatataacattgttaattttattctattatatct-----tttaaacttccatcatc-----aatagttc-tct----------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttg------tttttgtgctttgatcatctcttgtcctgctagtaattcttgatattt---ttcagattttgttgatatatgtat-----gcgtttgagccttt----gtttccttgaaaggagttgatctcattgagatt-atgtatgctcag----------------------
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ACCATAGCTGTGATCCAAGCCGGGCATGGCCTCCTGCAGCTGGGCTCCTGCAAGATTgtgagtgccaattgaaggcccccctctctctctctctacccacctgtttctatctacgcttgacctttcgtttgtcgttttcttcgtttggtcgtcgacgacgtggacgtctctcagcgtctcatacggaagcgtagctaccactaacagcgacgtgtgtgtgtgactgacactgtgcgcgcgcag
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 5
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagt---ttcatttgt------ttttgtgctttgatca-tctcttgtcctgctagtaattcttgatatttttca-gattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcat-tgagattatgtatgctcag--------------------------
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ACCATAGCTGTTATTCAAGCTGGACATGGCCTTCTCCAACTTGGTTCTTGCAAGATTgtgagttaattaatatgtatcactttttctcctccaaaaaatcatttttactcattttaagtttacttatttgacatggtaattttaagagttacatccgctagt-tttgtacagtttttatagatattgattggatattagaatctg-acacaaagtttgatatttttggttctattttcag
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagatt--ttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag-----------------------------------------------------
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ACCATAGCTGTTATTCAAGCTGGACATGGTCTTCTCCAACTTGGTTCTTGCAAGATTgtgagtta-attaattagtaccactttttc-tctccctccccaaaagccatttttactcattttaagtttacttatttg-atatgttaattttaaaagttacattcactagttttaaacagttgttatagctattcattggatggaagaatctgccacaaaaaaatatcaaatgtttgatattttttgttctattttcag
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCTTGCAAGATTgtgagtaa-atttgtatata-actttttttttctttatttccact--caattttagaattttatttg--taaactaaaatttactgtcgctactttcacggcatcc---------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCTTGCAAGATTgtgagtaa-atttgtatatatctttt-----ttttttat-----------ttctacacattttt-agattttttt-atttataaattaaaatttactgccactacttttacagcattca--------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 6
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttga-tatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACCATAGCTGTTATTCAAGCCGGACATGGCCTTTTACAACTTGGTTCTTGCAAGATTgtaagtcttttttattttggttcatggttaaaagattgtaagtcttctcttacttgggatctttgcggttatgttctctaaacttactcag-------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 7
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACCATAGCTGTGATTCAAGCTGGGCACGGACTTCTCCAACTAGGATCCTGCAAGATCgtgagtatc-tcagctctc----------cattgcacggcattttaaaaa--cttgagttttcacgtaccatga-gccacag---------------------------------------------------------------
upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 7
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
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ACCATAGCTGTGATCCAAGCTGGGCACGGACTTCTCCAACTAGGATCCTGCAAGATCgtgagtatctcagctctccattgcacggcattttaacgtaccatgagccacag--------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719944|gb|FC068689.1|FC068689EST: CTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATT ATACCGGAAGACCTTCATTTTGTGCTGAGAATGCGGCATACCTTTGAATCT
genomic: CTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttca ... gtatgctcagATACCGGAAGACCTTCATTTTGTGCTGAGAATGCGGCATACCTTTGAATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGCAAGATTgtgagtttcatttgtttttgtgctttgatcatctcttgtcctgctagtaattcttgatatttttcagattttgttgatatatgtatgcgtttgagcctttgtttccttgaaaggagttgatctcattgagattatgtatgctcag
- - - - - - - CAAGCT
- - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA