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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCACTTGTCTGTGTTGCTGCTTCAGCTGTCATTGAGAGCTTTCCAGATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttgcttgcctgtgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g01410.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G34570.2 (Glycine max), 5'ss of exon 4
ATATCCACTTGTCTGTGTTGCTGCTTCAGCTGTCATTGAGAGCTTTCCAGATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttgct-tgcctgtgcag-------
|||||||||| | |||||||||||||||||||| ||||||||||| || |||||||| ||   |  |||  ||||  ||| |  || | | || || |  || || |   || || | | |   |||||     | |  |||  |||     | |||         | |||||||    | | |   |||         
ATATCCACTTATTTGTGTTGCTGCTTCAGCTGTTATTGAGAGCTTCCCTGATCTTTTCCGTAGCAAATATAATCCATATGATCGCTCTATAATAGTGACAgtaagata--ccaatttacttgagatttggatagatc--tttatatatccgatatggaagcaataaatacattctgaattctactcatgctaaatgcag

upper sequence: Vv19s0014g01410.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G35830.1 (Glycine max), 5'ss of exon 3
ATATCCACTTGTCTGTGTTGCTGCTTCAGCTGTCATTGAGAGCTTTCCAGATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttatcccatattcctataatttgctctaagccatttcaataaatattctggctcattgtcaaacattctttg---cttgcctgtgcag-------
|||||||||| | ||||| |||||||||||||||||||||||||| || ||| |||| ||   |  |||  ||||  | | |   | | | || || | ||| || |   || || | | |   |||||     |   || |  ||| ||    |     |     ||| ||  | ||       | |||||         
ATATCCACTTATTTGTGTAGCTGCTTCAGCTGTCATTGAGAGCTTCCCTGATTTTTTCCGTAGCAAATATAATCCATACGATCGTTCTATAATAGTGACGgtaagata--ccaatttacttgagatttg----gatagatctttatagatccaatatggaagcaataaatatattctggattccacttgtgctaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546475|gb|CF514707.1|CF514707
EST:     ATCTGATCCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATG                         ATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCT
genomic: ATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttat ... gcctgtgcagATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCT
EST: gi|33409945|gb|CF215572.1|CF215572
EST:     ATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATG                         ATAGCCAAATGCCTAAGACCAGTGGCTCTTGGCCTTATCTTATGTGCCTCT
genomic: ATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttat ... gcctgtgcagATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCT
EST: gi|34546390|gb|CF514622.1|CF514622
EST:     ATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATG                         ATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCT
genomic: ATCTTTTTCGAGACCCATACTATCCCAATGCTAACTATTTGATGGTTATGgtgagcttat ... gcctgtgcagATAGCCAAATGCCTAAGACCAGTGGTTCTTGGCCTTATCTTATGTGCCTCT