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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttactttaaatgtatgctcctagtattcaagtaaaatggttcttcatccaaattgtttctcttgttcagtataaaattatatctgattcattcgt...

Basic information

species Vitis vinifera
transcript Vv18s0122g01190.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G01970.4 (Glycine max), 5'ss of exon 5
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgt-attttactttaaatgtatgctcctagtattcaagtaaaatggttcttcatccaaattgtttctcttgttcagtataaaattatatctg-attcattcgt-------------------------------------------
|| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| |||||||||||| ||||||||   || |  ||   || |   |  || |||| |   |||    |   | ||  |  |||||    |    |     ||| ||  || ||  || ||| ||                                           
GAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCCTATAACAAGAAACAGgttggttcatctttggtg-aca-tgttattatttacagaaag-aatctgtaattta--ttgttctcatcagcccaaggaaagttgaatatgtgtttattggtctgtaatgagctgttctcataggcttttgtttcatgttgtcag

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G01840.1 (Glycine max), 5'ss of exon 6
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgt--attttactttaaatgtatgctcct----------agtattcaagtaaaatggttctt--catccaaat------------tgtttctcttgttcagtataaaattatatctgattcattcgt---------------
|| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||||   ||   ||||     | || || |          || ||      | ||| |||||   || || ||             ||||| | ||| || |||   ||||   ||| ||| | |  |               
GAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattg-gtctcattgactttttgtttatgttgtcag

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G01840.8 (Glycine max), 5'ss of exon 5
-------------------GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgt--attttactttaaatgtatgctcct----------agtattcaagtaaaatggttctt--catcc------------aaattgtttctcttgttcagtataaaattatatctgattcattcgt---------------
                   || || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||||   ||   ||||     | || || |          || ||      | ||| |||||   || ||            ||  ||||| | ||| || |||   ||||   ||| ||| | |  |               
AATTTTATGAATTGTTTAGGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGgttggttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattg-gtctcattgactttttgtttatgttgtcag

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G01840.5 (Glycine max), 5'ss of exon 6
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgt--attttactttaaatgtatgctcct----------agtattcaagtaaaatggttcttcat---ccaaat-----------tgtttctcttgttcagtataaaattatatctgattcattcgt----------------------
|| || || || ||||| || ||  | || ||  ||||||| || |||||||||||||||| ||| |||||||| ||||||||   ||   ||||     | || || |          || ||      | ||| |||||  |    ||||             ||||| | ||| || |||   ||||   ||| ||| | |  |                      
GAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGGTTGgttcatctttggtgatgtgttcttgtttataggaagaatctgtaaagaattgttctcaacagcccaaggaaagcggaatatgtttttattggtctgtaatgaattg-gtctcattgactttttgtttatgttgtcaggcggaag

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G20696.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattt--tactttaaatgtatgctcctagtattcaagtaaaatggttcttcatccaaattgtttctcttgttcagtataaaattatatctgattcattcgt
||||||||||| ||||| || || || || ||||| || || || || |||||||||||||||||||| ||||| |||  |||| ||  |  |||  || ||     |||   |     || | |             | |||| |    | || | ||  |     ||        ||||  
GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGgtaattgtttatttgcatatagaaggctatgttatgtttatattaaccacgttattgagttgtctactctcttta-tactagtcagtagtcacactattca-

upper sequence: Vv18s0122g01190.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G20696.2 (Arabidopsis thaliana), 5'ss of exon 6
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattt--tactttaaatgtatgctcctagtattcaagtaaaatggttcttcatccaaattgtttctcttgttcagtataaaattatatctgattcattcgt-----
||||||||||| ||||| || || || || ||||| || || || || |||||||||||||||||||| ||||| |||  |||| ||  |  |||  || ||     |||   |     || | |             | |||| |    | || | ||  |     ||        ||||       
GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGTAATTgtttatttgcatatagaaggctatgttatgtttatattaaccacgttattgagttgtctactctcttta-tactagtcagtagtcacactattcaaggctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135931|gb|CB921269.1|CB921269
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|351049301|gb|FQ429044.1|FQ429044
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37189590|gb|CF608939.1|CF608939
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATNACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71872246|gb|DT021301.1|DT021301
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71866454|gb|DT015509.1|DT015509
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCCC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71870392|gb|DT019447.1|DT019447
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|18458654|gb|BM436932.1|BM436932
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71871903|gb|DT020958.1|DT020958
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110422203|gb|EC988518.1|EC988518
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTTTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|349812463|gb|FQ407082.1|FQ407082
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|77587638|gb|DV222996.1|DV222996
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|349812462|gb|FQ407081.1|FQ407081
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|349808030|gb|FQ402421.1|FQ402421
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71870289|gb|DT019344.1|DT019344
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71875149|gb|DT024204.1|DT024204
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71872390|gb|DT021445.1|DT021445
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30321835|gb|CD005097.1|CD005097
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110378901|gb|EC944058.1|EC944058
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30136340|gb|CB921678.1|CB921678
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|34544994|gb|CF513226.1|CF513226
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30132451|gb|CB917790.1|CB917790
EST:     GCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGANAAATCCCTC
genomic: GCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71870838|gb|DT019893.1|DT019893
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37188038|gb|CF607389.1|CF607389
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110701263|gb|EE078641.1|EE078641
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110359145|gb|EC920159.1|EC920159
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71877377|gb|DT026432.1|DT026432
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37187271|gb|CF606624.1|CF606624
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110727673|gb|EE104704.1|EE104704
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|27586818|gb|CB009513.1|CB009513
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30125574|gb|CB910913.1|CB910913
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37188411|gb|CF607760.1|CF607760
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71872295|gb|DT021350.1|DT021350
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71877289|gb|DT026344.1|DT026344
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37190659|gb|CF610008.1|CF610008
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|77584467|gb|DV221302.1|DV221302
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71867293|gb|DT016348.1|DT016348
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71879402|gb|DT028457.1|DT028457
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|34545986|gb|CF514218.1|CF514218
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|349812002|gb|FQ410799.1|FQ410799
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGGGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37189938|gb|CF609287.1|CF609287
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30135991|gb|CB921329.1|CB921329
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAAGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71873912|gb|DT022967.1|DT022967
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110688346|gb|EE066794.1|EE066794
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|349822310|gb|FQ412574.1|FQ412574
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37188583|gb|CF607932.1|CF607932
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|71869029|gb|DT018084.1|DT018084
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|110725319|gb|EE101688.1|EE101688
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|77579649|gb|DV218677.1|DV218677
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37187855|gb|CF607208.1|CF607208
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|30125704|gb|CB911043.1|CB911043
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
EST: gi|37189435|gb|CF608784.1|CF608784
EST:     AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAG                         GCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC
genomic: AGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttact ... tgggaaccagGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGgtattttactttaaatgtatgctcctagtattcaagtaaaatggttcttcatccaaattgtttctcttgttcagtataaaattatatctgattcattcgt

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa