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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTAAATAATTGTGTGGGGAGGAAAAATTATATCACGTTCGTGTGCCTTATGGCAGTGAGCCTTGTCTGGgtaagttgggtccttctcattttcattggattaagctttaatttatttttaaatcggggttccgccagccccagctgaagttgaattttgtgtctgcattcatgcttcatgtgtgtgccag

Basic information

species Vitis vinifera
transcript Vv18s0122g00920.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G01810.1 (Glycine max), 5'ss of exon 8
TGGTTAAATAATTGTGTGGGGAGGAAAAATTATATCACGTTCGTGTGCCTTATGGCAGTGAGCCTTGTCTGGgtaagttg---------ggtccttctcatt----ttcattg---gattaagctttaattt--atttttaaatcggggttccgccagccccagctgaagttgaattttgtgtctgc--attcatgcttcatgtgtgtgccag
||||| || |||||||| || | ||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||         | || | || | |    ||| |||     ||   |      |    |  || | |      |  |      ||  |   | | ||||||| | | | |  | | |    ||||   |||  |||
TGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGGgtaagttgcataaagttgttcatcctgaatctagttccttgcccagttgcccccctcctctggtccttcagttttacattggaacaatccttccagattagaattttttattttcttacttaatgctcatacatgtaacag

upper sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 6
TGGTTAAATAATTGTGTGGGGAGGAAAAATTATATCACGTTCGTGTGCCTTATGGCAGTGAGCCTTGTCTGGgtaagttgggtccttctcattttcattgga----ttaagctttaatttatttttaaatcggggttccgccagccccagctgaagttgaatttt-gtgtct---gcattcatgcttcatgtgtgtgccag
||||| || |||||||| || | ||| ||||| |||||||| ||||| ||||||||||||||||| || |||||||||||  |     |||| || | |  |     | | |     | |  |  |  |          |  |   ||  |   | | ||||||| || | |     | | |  | ||||   |||  |||
TGGTTGAACAATTGTGTTGGAAAGAAGAATTACATCACGTTTGTGTGTCTTATGGCAGTGAGCCTAGTTTGGgtaagttgcataaagttcatcttgaatctagttcctcaccccccctctggtccttcagtttcacagagaaaattccttccagattagaatttttgtatttttcttacttaatcctcatacatgtcacag