1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGAACTAATCACAAAGCAAGCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgagatgggatccagttttggcatgtccagtttgatgtatcttcccctctgcctatcaatttaacctttttttgggattttgatgcag
species | Vitis vinifera |
transcript | Vv18s0122g00550.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|351055531|gb|FQ442327.1|FQ442327
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCGATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|110365343|gb|EC928182.1|EC928182
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|110376059|gb|EC941099.1|EC941099
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|110426132|gb|EC992529.1|EC992529
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|351039035|gb|FQ457710.1|FQ457710
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|110381644|gb|EC935009.1|EC935009
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|349827747|gb|FQ422615.1|FQ422615
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|34415970|gb|CF414724.1|CF414724
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|71870629|gb|DT019684.1|DT019684
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|33404794|gb|CF210421.1|CF210421
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCEST: gi|34542594|gb|CF510826.1|CF510826
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
EST: GCACTGTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAA GTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
genomic: GCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgag ... tttgatgcagGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAACTAATCACAAAGCAAGCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAgttcagtgagatgggatccagttttggcatgtccagtttgatgtatcttcccctctgcctatcaatttaacctttttttgggattttgatgcag
- - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC