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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagtactctgccaacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag

Basic information

species Vitis vinifera
transcript Vv18s0122g00120.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g62090.1 (Oryza sativa), 5'ss of exon 6
TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagt-actctgccaacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag
||||||||||  ||||||| ||  | || |||||||||||||||||||| |||||| | || ||||| ||||||||||| || ||| ||||| | |||||||  || |||||  | || |    |   | |||    |  |  |   |  |||   | || |||  ||  ||| |  |   |                     
TCATCTGTGAAATCTGGTTCGCCATGTCTTGGATTCTTGATCAGTTCCCAAAGTGGTTTCCTATTGAGAGGGAAACTTACCTTGACCGGTTGACATTGAGgtttgttactcttgccaccttgtat-cacttgccttctattctttccgacgttctgt-gacttactattatttttcctggatag-------------------

upper sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G082580_T01 (Zea mays), 5'ss of exon 4
TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagtactctgcc-aacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag
| ||||||||  | ||||||||  | || |||||||||||||||||||| |||||||| |||||||| || || ||||| || ||| | |||||  | |||| |||    ||   ||    |     |  ||| |  | ||   ||  ||   |     | |   |    ||  ||   ||||| || ||             
TAATCTGTGAAATTTGGTTTGCCATGTCCTGGATTCTTGATCAGTTCCCAAAGTGGCTTCCAATTGAGAGAGAGACTTACCTGGACCGTTTGTCGCTAAGgttagttgcatgttgaatggaataaactgttgccaact-atctccattctaaagttccaaatctaagaagttcattg--cttgtctgactag-----------

upper sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G177631_T01 (Zea mays), 5'ss of exon 4
TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagt-actctgccaacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag
| ||||||||  ||||||||||  | || |||||||||||||||||||| |||||||| ||||| || || || ||||| || ||| | |||||  | |||| |||  |      ||    |      | ||| |  |  ||   | |||      || |||     ||    |                             
TAATCTGTGAAATCTGGTTTGCGATGTCCTGGATTCTTGATCAGTTCCCAAAGTGGCTTCCAATCGAGAGAGAGACTTACCTGGACCGTTTGTCACTAAGgttagttgcatcctgaatggaataaacccttgcaaagttcta---aagctaaaaagttcattgcttgtctgaccag---------------------------

upper sequence: Vv18s0122g00120.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G025231_T02 (Zea mays), 5'ss of exon 6
TCATCTGTGAGGTCTGGTTTGCTCTTTCATGGATTCTTGATCAGTTCCCGAAGTGGCTCCCAATTGACAGGGAAACTTATCTAGACAGGTTGTCCTTGAGgtgagtactctgccaacttcacgtgttcatgctagttcatagtcaggctgttggattgatttagaatcctttcttattcttgtttgtctgtttctttgtcag
| ||||||||  ||||||||||  | || |||||||||||||| ||||| |||||| |||| ||||| || || ||||| |||||| || ||||  |||||| |||    |||      ||| |  | ||  |||       ||   ||||||  ||||    || |  || ||| |  | | | |                
TTATCTGTGAAATCTGGTTTGCCATGTCTTGGATTCTTGATCAATTCCCAAAGTGGTTCCCTATTGAGAGAGAGACTTACCTAGACCGGCTGTCACTGAGgttagt----tgctgttgccacctactaatattagccttc--tcttcctgttgttttga----gactaattacttgta-tggatag----------------