Sequence
atgc intronic sequence ATGC exonic sequenceCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatctcaatattttttaaaatgagttttctattcatttttttttcttatctaattaattaatttatttgtatgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 6
CACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatct-------caatattttttaaaatgagttttctattcatttt------tttttcttatctaattaattaatttatttgtatgtag-------------------------------------------------------
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CACAATGATGCCATTTTGCTAGTTATTGTACCTGCAGCTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAAAGGAATATGATGGAGAAGgtagactgtttgcatggttctttttaggattattgttaaataaaacttgtggaattcttcttgagtacttgtctgatttccttctctattaggtattagctttgccattgttaattgactaaataggcgaaaacatattttcgtag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G00430.1 (Glycine max), 5'ss of exon 6
CACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatct-----caatattttttaaa--atgagttttctattcatttt------tttttcttatctaattaattaatttatttgtatgtag-------------------------------------------------------
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CATAATGATGCCATTTTGCTAGTTATTGTACCTGCAGTTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAAAGGAATATGATGGAGAAGgtagactgtttccactgtttttttaaggattattgttacgtaaaactcatggaatttttcttgagtacttgtctgatttccttctctatcaggtattagttttttcattgttaattgactaaataggcaaaaaaatattttgatag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 6
CACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatctcaatattttttaaaatgagttttctattcatttttttttct-------tatctaattaa-----ttaatttatttgtatgtag--------------------------------------------------------
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CACAATGATGCCATACTGCTGGTTATAGTGCCTGCTAGCCAGGCATCTGAAATTTCATCATCCCGAGCCCTGAAGATTGCAAAGGAGTATGATCCAGAGAgtgagtacatctgtatttccgatctgtcttatcttaatattgtttattatttgtatacctgataagaactgttgatttacctacctattatcacttcagtttgcttaaaatactcattagctaacatcactcctccctacttatag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 6
CACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatctcaatattttttaaaatgagttttctattcatttttttttcttatctaattaattaatttatttgtatgtag---------------------------------------------------------------
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CACAACGATGCTATATTGCTGGTTGTTGTGCCTGCTAGCCAGGCATCTGAAATTTCGTCATCTCGAGCCCTGAAGATCGCAAAGGAGTATGATCCAGAGAgtgagtatataggcactttcgttatacagacccttcattatacttctaaacaactggggttactacatttggatagaaacattggaactaaattttgtgtatactataaccaaaaaaaaaaacatcactccttatttatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715464|gb|FC067082.1|FC067082EST: AATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATG GTACAAGAACAATCGGTGTAATTAGTAAAATAGATCAAGCTGCATCAGACC
genomic: AATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatctcaa ... ttgtatgtagGTACAAGAACAATCGGTGTAATTAGTAAAATAGATCAAGCTGCATCAGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGCCCAGGCACCCGAAATTGCTTCATCTCGAGCTCTCAAAATTGCCAAGGAATATGATGGAGATGgtaatctcaatattttttaaaatgagttttctattcatttttttttcttatctaattaattaatttatttgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG