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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTTGCCTAGTTCAATTCGTGGGAGTATTAGTAAGGGTGAATATGACCTGGCGGTTAGGGAATACAGGAAAGCGAAGTCAATCGCTCTGCCTTCTCATgtactggaattcatattgaactgcttcttatttcattctatctattttttgtaagatcatatgctgttttattttgaagcatcatgtgcactatttgttg...

Basic information

species Vitis vinifera
transcript Vv18s0072g00720.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G76850.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACTTGCCTAGTTCAATTCGTGGGAGTATTAGTAAGGGTGAATATGACCTGGCGGTTAGGGAATACAGGAAAGCGAAGTCAATCGCTCTGCCTTCTCATgta---ctggaattcatattgaactgcttcttatttcattctatctat-tttttgtaagatcatatgctgttttattttgaagcatcatgtgcactatttgttg-------------------------------------
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CAATTTACCCAGTATCATTCGTAGCAGTATTAGCAAGGGTGAATATGATTTGGCTGTTCGAGAATACAAGAAGGCGAAATCTATTGCTCTACCTTCTCATgtatgcctgaattttcaatcacactctcttgagacagatcctatccacattcctataagcactgagccttctttttattacgatttaattta-attacataacaaggctcttgacaatatagaaaaacaagctgctttcag

upper sequence: Vv18s0072g00720.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G21170.1 (Arabidopsis thaliana), 5'ss of exon 6
CAACTTGCCTAGTTCAATTCGTGGGAGTATTAGTAAGGGTGAATATGACCTGGCGGTTAGGGAATACAGGAAAGCGAAGTCAATCGCTCTGCCTTCTCATgtactggaattcatattgaactgcttcttatttcattctatctattttttgtaagatcatatgctgttttattttgaagc--atcatgtgcactat----ttgttg----------------------------
||| || || |||  ||||||| | |||||||| || || || |||||  |||| ||| ||||||||| ||| |||||||| || ||||| |||||||||||| || |   |  |||   |  ||  | |      |    ||  | ||| |   |  ||  |||  ||| ||   |      |||  |||| ||      | |||                            
CAATTTACCCAGTATAATTCGTAGTAGTATTAGCAAAGGCGAGTATGATTTGGCTGTTCGGGAATACAAGAAGGCGAAGTCTATTGCTCTCCCTTCTCATgta-tgcatgcccgattatccaactcttcagacagatagcactcatgtttctcctagtattcgcttgtttgttaccatattattcacttgcattacaaagctcttgaaagcatagagtaacactttggttacag