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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCTGATTTTGCATATTCTCCAAATCCACACAgtaagtgattgaatcagattcaaagtttaacttgatcattagttctgtttattaatatatatttttttctatttacattctggtttggcttctgggtaaa...

Basic information

species Vitis vinifera
transcript Vv18s0072g00460.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548933|gb|CF517165.1|CF517165
EST:     GTACCTGATTTTGCATATTCTCCAAATCCACACA                         ATGGAAGCTCTGGTTCCGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
genomic: GTACCTGATTTTGCATATTCTCCAAATCCACACAgtaagtgatt ... tttgttgcagATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
EST: gi|33407190|gb|CF212817.1|CF212817
EST:     GTACCTGATTTTGCATATTCTCCAAATCCACACA                         ATGGAAGCTCTGGTTCCGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
genomic: GTACCTGATTTTGCATATTCTCCAAATCCACACAgtaagtgatt ... tttgttgcagATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
EST: gi|110425162|gb|EC991541.1|EC991541
EST:     GTACCTGATTTTGCATATTCTCCAAATCCACACA                         ATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
genomic: GTACCTGATTTTGCATATTCTCCAAATCCACACAgtaagtgatt ... tttgttgcagATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
EST: gi|110415787|gb|EC981720.1|EC981720
EST:     GTACCTGATTTTGCATATTCTCCAAATCCACACA                         ATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA
genomic: GTACCTGATTTTGCATATTCTCCAAATCCACACAgtaagtgatt ... tttgttgcagATGGAAGCTCTGGTTCTGACAAGAACAATGTGGAACTTGAACCGAAAAGGA