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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGgtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcag

Basic information

species Vitis vinifera
transcript Vv18s0072g00370.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G36790.1 (Glycine max), 5'ss of exon 6
TTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGgtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcag
| || |||||||| ||||||||||| || |||||  |||||||||| || || |||| |||||| ||| | ||||||||||||||| |  | |||  |||||||      | || | |  || |     | | ||  ||  || |    |  |  ||  ||  ||    |  | |   |              
TAATATGTGAAATCTGGTTTGCTGTGTCTTGGATTTTGGATCAGTTTCCCAAATGGTGCCCAATTGAGAGAGAAACATACCTTGATCGTTTGTCATCGAGgtatgcatctttctgtgtg-ccttggagtttttttacttaattattca-acag--ctaattctttgcaaaaacttaacag-------------

upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G28080.1 (Glycine max), 5'ss of exon 5
TTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGgtatttggggtgctctctctccctctctctctcttgtttggttgtatgcatggtactgttttcttagctatgcgtcttaaaccttgttctcag
| || |||||||| ||||||||||| ||||||||  | |||||||| ||||| |||  ||||||   ||| ||||||||||||||| |  |||| ||  ||||||||     || ||||| | | ||     ||| | ||  ||| ||     ||     || ||   ||      ||| |  ||   | |||
TAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTTCCAAAATGGAGCCCAATTCTGCGAGAAACATACCTTGATCGTTTATCTCTTCGgtatttgat---ctttctctgcgtatc-----cttatatgtgtgtgtgggacataaaacattattcatta-atactttacaattt---cacag

upper sequence: Vv18s0072g00370.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G08920.1 (Glycine max), 5'ss of exon 6
TTATTTGTGAAATATGGTTTGCTGTATCATGGATACTGGATCAGTTCCCAAAGTGGTACCCAATCGAGCGGGAAACATACCTTGATAGGCTATCACTGAGgtatttggggtgctctctctccctctctctctcttgtttggttgt-atgcatggtactgttttctta-gctatgcgtcttaaaccttgttctcag
| || |||||||| ||||||||||| ||||||||  | |||||||||||||| |||  ||||||     | ||||||||||||||| |  |||| || |||||||||      ||| ||||   || || ||  | | || |||| |   | || | | ||   | | ||| | |   || |             
TAATATGTGAAATCTGGTTTGCTGTCTCATGGATTTTTGATCAGTTCCCAAAATGGAGCCCAATTCTTAGAGAAACATACCTTGATCGTTTATCTCTAAGgtatttga-----tctttctctgactatc-cttatatgtgtttgtgacataaggcattattcattaatgctttacaatttcacag----------