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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATTGAGCAATGGATTGATTTTGGATCATTGGAGATTGACGCCAATATTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaactgccactttgttcatttatttatttgtacttatttcttttttttcttttctcttttgttctaatgattggcaataactcacttgtgtttcctttatgttctcgtattttgaacaaag

Basic information

species Vitis vinifera
transcript Vv18s0041g01900.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724096|gb|EE099626.1|EE099626
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|71869083|gb|DT018138.1|DT018138
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|37185035|gb|CF604388.1|CF604388
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110686647|gb|EE064527.1|EE064527
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|161718004|gb|FC068544.1|FC068544
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|161715176|gb|FC064854.1|FC064854
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|77582584|gb|DV220275.1|DV220275
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110729986|gb|EE106550.1|EE106550
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110393931|gb|EC959520.1|EC959520
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|161710388|gb|FC059006.1|FC059006
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTG
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTG
EST: gi|110728722|gb|EE104537.1|EE104537
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110731114|gb|EE108966.1|EE108966
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|37185021|gb|CF604374.1|CF604374
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110724393|gb|EE100182.1|EE100182
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAAGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|110699668|gb|EE076870.1|EE076870
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAAGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|71890428|gb|DT039483.1|DT039483
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|161710113|gb|FC059798.1|FC059798
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCT
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCT
EST: gi|110689672|gb|EE066099.1|EE066099
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|71872955|gb|DT022010.1|DT022010
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGATGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
EST: gi|161720342|gb|FC071195.1|FC071195
EST:     TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCG                         GCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC
genomic: TTTTGCGTTGGTTCATCCCAAGAATTGGTTTTGCTGTATACCTTCCTCCGgttggtcaaa ... ttgaacaaagGCTGAGGAAGCTGCAATTTCTGCATTGAAGAGAGCGTTAGGTGCCTTGAAC