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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgttctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag

Basic information

species Vitis vinifera
transcript Vv18s0001g14990.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g14990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g65940.1 (Oryza sativa), 5'ss of exon 5
AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgttctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag
   || ||||| |||||  | || ||||||||||| || | ||  || || |||||||||||||| || |||||||| || ||||| ||||| ||||||||||||    |        | |||     || |  ||    |    ||         |     |  | |||| | |   ||| ||   |    |  |  ||| |                                       
CGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGgtaagagcttagttgatgtgcagaaagtaa-tttatattgtgaagat---------gaagggtggctaatttact---ttgctcgtcacttgatga--aatag---------------------------------------

upper sequence: Vv18s0001g14990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G100454_T03 (Zea mays), 5'ss of exon 5
AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgttctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag
   || ||||| |||||  | || || || ||||| || | || ||| |||||||||||||||||||| |||||||| ||||| || ||||| |||||||||| |    || | |  ||  |   ||||||   ||   |   | ||  |       | ||| |     |    | ||||| |    |                                                      
CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatgtggttg-atatgcttaaaacttcaaaagaataataatgcgatgatgac---aggcttactttgctcttgttacttggtggaaacag---------------------------------------------------

upper sequence: Vv18s0001g14990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G09340.1 (Glycine max), 5'ss of exon 1
AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgtt--ctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag
||||| || || ||||| |||||||| |||| ||| || |   | || || ||||| ||||||||||| ||||||||||||||||| ||||| ||| |||||||| |          ||| || | |    | | ||  |  |   ||||| |  |  | |       |||    | ||  ||    | | |  || || |||  |||                                    
AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagta----------ctaaagttgtttttttctttttactt--gtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa--------------------------------