Sequence
atgc intronic sequence ATGC exonic sequenceCAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttgtccccatttgtttgtttttgttttgttttattttgctttggttttttttaatatattagatgcactaggcaatggtaaataaacaattta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 6
CAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttgtccccat--ttgtttgtttt---tgttttgttttat--tttgctttggtttt---ttttaatatattagatgcactaggcaatggtaaataaacaattta
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CAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTgtaagttttagtgcaagagtcattacagttaaatattttgttttataatttatcctgattttagtttttgataaaa-ggaagtattaaatcaagttttattgtttgacag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 5
CAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttgtccccatttgtttgtttttgttttgttttattttgctttggttttttttaatatattagatgcactaggcaatggtaaataaacaattta
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CAATGCTATGTCTGTGGATTTGGATGATCTTGCTGTTCTAATCCATGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTgtaagttttagtgcaag--aatcgttacagttaaatatgcagtttttataatttatcctgattt--tag-------------------------------
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 6
CAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttgtcccca--tttgtttgtttttgttttgttttattttgctttggtttt--ttttaatatattagatgcactaggcaatggtaaataaacaattta------
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CAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTgtaagttttagtggaagaatcattacagttaaatatgctgtttttataatttatcctgattttagtatttgatgaaaacaagtcttagaccaatttttattgtttgacag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 5'ss of exon 6
CAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatctttt--gtccccatttgtttgtttttgttttgttttattttgctttggttttttttaatatattagatgcactaggcaatggtaaataaacaattta
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TAATTCTATGTCTGTTGATTTGGATGATCTAGCGGTTTTAATCCTTGATGAGGCAGACCGCCTTCTACAGACTGGGTTTGCCACTGAAATCACAGAGCTGgtatctttctgatttctttgcgtttatctctttcgtacggtcggttcctgtgacacctagtattgaattgtagtcaataacttcttgtctttgt-tagttt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719083|gb|FC069336.1|FC069336EST: AGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTG GTTCGCTTATGTCCTAAACGGAGGCAGACCATGCTATTTTCAGCTACGATG
genomic: AGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttg ... tactttgcagGTTCGCTTATGTCCTAAACGGAGGCAGACCATGCTATTTTCAGCTACGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGgtatcttttgtccccatttgtttgtttttgttttgttttattttgctttggttttttttaatatattagatgcactaggcaatggtaaataaacaattta
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa