Sequence
atgc intronic sequence ATGC exonic sequenceGTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagttttttactcatttgttgacattgtaaagtcgaggattgagcctgagactgattttccctgtaacttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AC195874.2_FGT002 (Zea mays), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagttttttactcatttgttga---cattgtaaagtcgaggattgagcctgagactgattttccctgtaacttgcag----------------
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GTTTACCTGATACTAGATGAATTTATTCTTGCTGGGGAGCTGCAAGAAACAAGCAAAAAGgta-acataattttctgtcttttttgtagtattttttgccagaaccaacagtatcatacatatacagtttctgtgtatgataaatgtatgtcacagtttct
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G052713_T01 (Zea mays), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgt-gcatt----agttttttactcatttgttgacat-tgtaaagtcg-----aggattgagcctgagactgattttccctgtaacttgcag-------
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GTTTACTTGATATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttttcccatcataataaaaatttattgtcatctttaaagttatttgtatgaaagagcctctagccgagttggttaggtggtctgagcagcact
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagtttt---ttactcatttgttgacat--tgtaaagtcgaggattgagcctgagactg---attttccctgtaacttgcag-----------
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-TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattcttttggagttactaagcactttgcatgctgctacttgctagtgtaagatttaagctgtgtagttacactatgattccaggcgtagttgcct
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagtttt---ttactcatttgttgaca--ttgtaaagtcgaggattgagcctgagactg---attttccctgtaacttgcag----------
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GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttttgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgca---ttagttt-----tttactcatttgttga----cattgtaaag--------tcgaggattgagcctgagactgatt----ttccctgtaacttgcag
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GTGTACTTGATACTCGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGgtgtgaaatttttgtttcaagcttctctctttcacttaaatgtatcacacatgctcttgctcaagtgctaaacttttaaatgttggggacttgttttaattcgcag
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ09792 (Selaginella moellendorffii), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagttttttactcatttgttgacattgtaaagtcgaggattgagcctgagactgattttccctgtaacttgcag
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GTTTACTTGATCCTCGACGAGTTCATTCTTGCTGGCGAGTTACAAGAAACCAGCAAAAAGgtatgccgtcgtatgtt-ctcgtctttgttccttg--gattcatgagtttgttccag-------------------------
upper sequence: Vv18s0001g14240.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ11600 (Selaginella moellendorffii), 5'ss of exon 5
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagttttttactcatttgttgacattgtaaagtcgaggattgagcctgagactgattttccctgtaacttgcag
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GTTTACTTGATCCTCGACGAGTTCATTCTTGCTGGCGAGTTACAAGAAACCAGCAAAAAGgtatgccgtcgtatgtt-ctcgtctttgttccttg--gattcatgagtttgttgcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188193|gb|CF607542.1|CF607542EST: TACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAG GCCATCATAGAGAGGATGGGGGAATTGGAAAAGCAA
genomic: TACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcatta ... taacttgcagGCCATCATAGAGAGGATGGGGGAATTGGAAAAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGgtgtgcattagttttttactcatttgttgacattgtaaagtcgaggattgagcctgagactgattttccctgtaacttgcag
- - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA