Sequence
atgc intronic sequence ATGC exonic sequenceTATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaaactaactttgttggattcaaagcaagagtttctttggttaatataaaattttgaaccttaatctctagtttctctaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaaactaactttgttggattcaaagcaagagtttctttggttaat---ataaaattttgaaccttaatctctagtttctctaat----
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CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttt----tttcccctgaaaaat---agttaaaactttgcatggggaatcaaatggaaatttcttgcaacttcattaggaactttagcacgc
upper sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaaactaactttgttggattcaaagcaagagtttctttggtt--aatataaaattttgaaccttaatctc--tagtttctctaat
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CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagca-gctccatactatcaatttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttatactaagtaggatgtcg---
upper sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 7
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaa-------actaactttgttggattcaaagcaagagtttctttggttaatataaaat-tttgaaccttaatctctagtttctctaat
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TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagtattcattgcatctacaggatctttgtgcgttaatag-tggtgt-------
upper sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03100.1 (Glycine max), 5'ss of exon 6
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttgg-----aaactaactttgttggattcaaagcaagagtttctttggttaatataaaattt-tgaaccttaatctctagtttctctaat
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TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtccttacattgcaattgttatatcccaaggatgtctgttcactgcatctacagaatctctgtgcattaatag-tggtgtct-----
upper sequence: Vv18s0001g13340.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G27190.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaaactaactttgttggattcaaagcaagagtttctttggttaatataaaattttgaaccttaatctctagtttctctaat
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CATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGgta--tattcaatttacttgtcccgaataatattg-atatttatctaaaccttccttgtcccccaattgatcctaaaatattgacgcag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110395663|gb|EC961332.1|EC961332EST: ACAAAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCG GATCGCATATCCAACATTGCTTACGATATCGTAAATGGGAACTGCACTCCC
genomic: ACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgt ... tgcatctcagGAACGCATATCCAACATTGCTTACGATATCGTAAATGGGAACTGCACTCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGAAGGGGAAACCATGAGAGTGATGTATGAGGCATGGTTTGTGGAATACAAAATTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCGgtaagtgtgtattctcttggaaactaactttgttggattcaaagcaagagtttctttggttaatataaaattttgaaccttaatctctagtttctctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa