Sequence
atgc intronic sequence ATGC exonic sequenceTATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctcctctaaattacatcgttgagtttgaagcaagagttctttagttcatgtagaattctgtactttttaaatcttattggtttctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g56880.1 (Oryza sativa), 5'ss of exon 6
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgca-attctcctctaaattacatcgttgagtttgaagcaagagttctttagttcatgtagaattctg--tactttttaaatcttattggtttctc
|||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||| | || ||||| || || ||||||||||||||||| | ||||| | | | | | | | | | | |||| || | | | ||| | | |||| |||| | | || |
CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACAgtaagcacttacagttttttttcccctgaaaaat--agttaaaactttgcatggggaatcaaatggaaatttcttgcaacttcattaggaactttagcacgc-
upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G093101_T01 (Zea mays), 5'ss of exon 6
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctcctctaaattacatcgttg-agtttgaagcaagagttctttagttca--tgtagaattctgtactttttaaatcttattggtttctc-
|||||||| |||| ||||||||| || |||||||||||||| ||| ||||||||||||| ||||| ||||| || || || || ||||| ||||| | ||||| | || | || || |||| | | | | | || || || | | || ||||| || || || | | | | ||
CATGGAAGGTGAAACCATGAGGGTGATGTATGAGCCATGGTTCGTGAAGTACAAAGTTGACGTTGTGTTTGCAGGACATGTCCACGCCTACGAACGCACAgtaagca-gctccatactatcaatttcttctgttgcaaatggttgggttattttttccactctgctatggacttctgagagttata---ctaagtaggatgtcg
upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03100.3 (Glycine max), 5'ss of exon 7
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctc------ctctaaattaca-tcgttgagtttgaagcaagagttctttagttcatgtagaat-tctgtactttttaaatcttattggtttctc
||||||||| || | | | || || |||||| |||||||||||| || ||||||||||| || ||||||||||| |||||||| |||||||||||||| ||| ||||| | || | |||| | ||| | ||| | |||| || | | ||| || | ||| | |||| || |||| |
TATGGAAGGGGAGACAGTTCGAGTAATGTATGAGAAATGGTTTGTGGAATATAAAGTTGATGTCGTCTTTGCTGGTCATGTTCATGCTTATGAACGATCTgtgagttctaaattccttattatccttacactacaattgttatataccaaggacgagta-ttcattgcatctacaggatctttgtgcgttaa----tagtggtgt---
upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03100.1 (Glycine max), 5'ss of exon 6
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctc----ctctaaattaca-tcgttgagtttgaagcaagagttctttagttcatgta-gaattctgtactttttaaatcttattggtttctc
||||||||| || | | | || || | || ||| |||||||||||| || ||||| |||||||| ||||||||||||||||| || |||||||||||||| ||| ||||| | || ||| || | ||| | ||| | | | || | | ||| || | ||| | |||| || |||| |||
TATGGAAGGGGAGACCGTTAGAGTATTGTACGAGAAATGGTTTGTGGAATATAAAGTCGATGTTGTATTTGCTGGTCACGTTCACGCTTATGAACGATCTgtgagttctcaatttctgtgtccttacattgcaattgttatatcccaaggatgt-ctgttcactgcatctacagaatctctgtgcattaa----tagtggtgtct-
upper sequence: Vv18s0001g13330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G27190.1 (Arabidopsis thaliana), 5'ss of exon 5
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctcctctaaattacatcgttgagtttgaagcaagagttctttagttcatgtagaattctgtactttttaaatcttattggtttctc
|||||||| |||| |||| || || || || | ||||||||| | ||||| ||||||||||| ||||| ||||| |||||||||||||| |||| ||| ||| ||||| | | | | | |||| || | || ||| || | || || | | || |
CATGGAAGGTGAAACATTGAGAGTCATGTACGAACAATGGTTTGTCAAATACAAGGTTGATGTTGTGTTTGCAGGTCATGTTCATGCCTATGAGAGATCGgta--tattcaatttacttgtcccgaataatattgatatttatctaaaccttccttgtcccccaattgatcctaaaatattgacgcag------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37183732|gb|CF603086.1|CF603086EST: ACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCT GAACGAGTATCANACATTGCCTACAACATTGTAAATGGGA
genomic: ACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgc ... tgcatctcagGAACGAGTATCAAACATTGCCTACAACATTGTAAATGGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGAAGGAGAAAGCATGAGGGTTATATATGAGCCATGGTTTGTGGAGTACAAAGTTGATGTTGTTTTTGCTGGTCACGTTCATGCCTATGAACGATCTgtaagtatgcaattctcctctaaattacatcgttgagtttgaagcaagagttctttagttcatgtagaattctgtactttttaaatcttattggtttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagcaa