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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgcttttatttttcaag

Basic information

species Vitis vinifera
transcript Vv18s0001g13090.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G07750.1 (Glycine max), 5'ss of exon 6
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgcttttatttttcaag
||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||    |||| ||     ||| | | | ||| | | ||| |||  |      | |  |||   | ||            || ||| | |||
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAGgtagattcttgaat-----gaagtttct-ttcatatattaaaatggaatatggttctgagtctccatt------------ttgtttgttaag

upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G37220.1 (Glycine max), 5'ss of exon 6
-GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgc-ttttatttttcaag
 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||     ||| ||     ||| |   | ||||| |||  | || ||| |  ||  || |||   |||   ||| | | |||| ||| | || 
GGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAggtagattattgaat-----gaagt---tcttcctatttgttcatatat-taaatggaatgtt---gttctgaatctccattttgtttgttaa-

upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G03180.1 (Glycine max), 5'ss of exon 6
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgcttttatttttcaag
|||||||||||||| ||||||||||| |||||||| |||||||| ||||||||  |||| |||||||| ||||||||||||||||| || |||      ||| |||||||| ||| ||||| |    | |   ||    ||  |||| |    |  ||  | | | ||  ||  | |  
GTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAGgtgagat----aattgtgtgaaat-tgtcttcctataggtttacacatactaattgaaagatgttctaaatc-tatacattacttgattag-

upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03230.1 (Glycine max), 5'ss of exon 6
GTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAAgtaagagcttggattttgtgaaatatgtgttccttttttataatttatgtctatccaaagttaacgttgataatgtgcttttatttttcaag
|||||||| ||||| |||||||| || |||||||| |||||||| ||||||||  |||| |||||||| ||||||||||||||||| || |||     | || |||||||| ||| ||||| |    | |   ||    ||  |||| |    |  ||  | | ||||| ||  | |  
GTTGTTTCCAGTGCCATAATTGACAAGTACATTGGAGAAAGTGCCAGGTTAATCAGAGAGATGTTTGGTTATGCACGTGATCACCAGgtgagat----gcttgtgtgaaat-tgtcttcctataggtttacacatactaatttaaagatgttctaaatc-tatacttttcttgattag-