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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttgagcttgttctaccccctgccctcatgatcatggttttaaatttctctttttgatgacattgacttcaaaatcctcttctgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g12960.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27578891|gb|CB001586.1|CB001586
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
EST: gi|27581740|gb|CB004435.1|CB004435
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAG
EST: gi|45770383|gb|CN006235.1|CN006235
EST:     AAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: AAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
EST: gi|27580870|gb|CB003565.1|CB003565
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
EST: gi|22007151|gb|BQ792185.1|BQ792185
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
EST: gi|26261297|gb|CA812360.1|CA812360
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
EST: gi|26260812|gb|CA811875.1|CA811875
EST:     CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCC                         GTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG
genomic: CCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttga ... tcttctgcagGTGAAGCTTGTTCGAGTCACCAAGAGGGTACACGAGGCATATTTTGCTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAGGCCCACTCTCTATCAAGTAATGAAAGAGATGATTGACAAGATGGGCTATGCTgtaagtttgagcttgttctaccccctgccctcatgatcatggttttaaatttctctttttgatgacattgacttcaaaatcctcttctgcag

- - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - AAGATG