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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTACCAAATGAACAGCACAGCAGTCCTCTTGAAGAAGTTCTGGAACCATCCTTACTTGCAATGAACTTAAAACTTGATTCTGCTCCTGTTGATGATGTgtaagtgttttgaaactttattttgcagttgatggattgaatgctttgtttttctggtggttcatagcttactggttcattacatatttcataaccactc...

Basic information

species Vitis vinifera
transcript Vv18s0001g12280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g12280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G03540.1 (Glycine max), 5'ss of exon 5
AACTACCAAATGAACAGCACAGCAGTCCTCTTGAAGAAGTTCTGGAACCATCCTTACTTGCAATGAACTTAAAACTTGATTCTGCTC---CTGTTGATGATGTgtaagtgttttgaaactttattttgcagttgatggattgaatgctttgtttttctggtggttcatagcttactggttcattac------atatttcataaccactc
  ||   ||||||  ||   | ||  |||   ||||||||  | |  || ||  | |||||||||||||| ||||||||||||||||   ||| |||||| ||||||||||||   |  ||  |||||   ||      ||  ||  ||  || | |||    ||||| |  | |   |||| ||        |   | ||||||||  
--CTGT-AAATGACAAGTCTAACAACCCTTCAGAAGAAGTGTTTGCCCCGTCAATGCTTGCAATGAACTTGAAACTTGATTCTGCTCCTCCTGATGATGACGTgtaagtgtttaatattttctttttgtttttt-----ttatatatttgcttctgctgacaattcatcgtgttcaatttcaatattcaattgtgcattataaccacc-

upper sequence: Vv18s0001g12280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G03610.1 (Glycine max), 5'ss of exon 6
AACTACCAAATGAACAGCACAGCAGTCCTCTTGAAGAAGTTCTGGAACCATCCTTACTTGCAATGAACTTAAAACTTGATTCTGCTCCTGTTGATG---ATGTgtaagtgttttgaaactttattttgcagttgatggattgaatgctttgtttttctggtggttcatagcttactggttcattac------atatttcataaccactc
  ||   ||||||  ||   | ||  |||   ||||||||  | |  ||||   | |||||||||||||| || |||||||||||||||  |||||   |||||||||||||| | |   || | |||   ||  |    |  ||  ||  ||||  |     ||||| |  | |   ||||  |        |   | |||||  | |
--CTGT-AAATGAGAAGTCTAACAACCCTTCCGAAGAAGTGTTTGCCCCATTGATGCTTGCAATGAACTTGAAGCTTGATTCTGCTCCTCCTGATGATTATGTgtaagtgtttagta---ttttcttgtgtttttt---ctacatatttgcttttgttaacaattcatcgtgttcaatttcaacattcaattgtgcattataactgccc