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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGgtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttag

Basic information

species Vitis vinifera
transcript Vv18s0001g08180.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G461145_T01 (Zea mays), 5'ss of exon 7
ACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGgtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttag
 ||||| || ||| ||||| || | || |||||  ||  ||| |     || || |||||||||||||| |||||| |||| || ||||| |||||||||||| | ||  ||  |||||      |||  |    | |||||  |    ||  | | |  |   ||  |   |||  | ||   |     ||||||
TCACTGTAAGTTTCCTGCTGTTATCCAGCATGGCAAGAATGGACCTACAACGAAGTTTCTTGCACTTGATAAGTGCATTCCTGGGCGCAATTTTTTGCAGgta-ctctcatttctttcaggatactttccatcaatattaataaaa--gtttttagtacatgtttgttt---ttgaagttatccattccattttag

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G06310.1 (Glycine max), 5'ss of exon 4
ACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGgtagcccttgttattttcatttatgttttaagggct--tttaatgtagtcattgctggaaatta-aatgcctcaattggtggtactgagcgagttttag
||||||||| |||||||||||||||||||||||||| |  |||| | |||| |||||||||||||| || || ||  |||| || ||  | || || ||||||    | |  ||  |  | ||  |||  |||| |  | |  |||  |   || | ||  |    || |    || | | || ||| ||    |||||
ACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGgta----taggcatagttctata-atttgcagggttaatcttctgtgatagctgtttgagttagtgatacaatcatggcttgttctgtgc---ctttag

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 6
ACACTGCAAATTTGCTGCTCTTGTTCAACATGGGGAGGTTGGTCAAGTGACTAAATTTCTTGCACTTGACAAGTGCCTTCCAGGTCGCAAATTTTTGCAGgtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagt-tttag
|||||||||||||||| ||||||||||||||||||| |  |||| | |||| |||||||||| ||| || || ||  || | ||  |  | || || ||||||    | |  |||    | ||  ||| | ||    |     |  |  ||| | ||  |  | ||  |  | |  ||| |      | |  |||||
ACACTGCAAATTTGCTACTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGTACTGGATAAATGTATTGCTGGGTGTGATTTCTTACAGgta----taggcattgcactctaattttcagggttaatcctcatgatagttgtttgagtt--agtgattacaatcatggcatgttctgtgcctttag