Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGATTGGCATTGAAGCCCGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAgtagtttattcacttgtttttcttcaaatctagtatagtatttcaatgcactaaaggcctaagtgttttttccatttttcttgtgattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G37130.2 (Glycine max), 5'ss of exon 6
TGCAGATTGGCATTGAAGCCCGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAgtagtt-tattcacttgtttttcttcaaatctagtatagtatttcaatgcactaaaggcctaagtgttttttccatttttcttgtgattag
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TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTAAAgtgacaatgtttatttttatttcttgaaatttctt-tggaacagaaatgga-tgggggcattctaattaatgatatttgtgctgctaccag
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G43530.1 (Glycine max), 5'ss of exon 3
TGCAGATTGGCATTGAAGCCCGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAgta-----gtttattcacttgtttttcttcaaatctagtatagtatttcaatgcactaaaggcctaagtgttttttccatttttcttgtgattag
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TCTAGATTGGCATTGAAGCCTGATGGCTTATTTTTAGCAGCTATTCTTGGTGGAGAAACATTGAAgtgacaatgtttaattatttttatttcttgaaatttttt-tggaacacaaatggatggagcattctaat--taatgatatttgtgctgttaccag
upper sequence: Vv18s0001g06830.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G22800.1 (Arabidopsis thaliana), 5'ss of exon 6
TGCAGATTGGCATTGAAGCCCGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAgta-gtttattcacttgtttttcttcaaatcta---gtatagtatttcaatgcac--taaaggcctaagtgttttttccatttttcttgtgattag---
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TGCAAGCTAGCACTGAAGCCGGATGGCTTATTTTTAGCAGCAATTCTTGGTGGAGAAACCTTAAAgtttgtcctctctttcatttcaaatcaatactcaatgtagagtctcttattccatatcatgtttctgattagcctttacgtattgaaattatttacaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110383911|gb|EC948316.1|EC948316EST: CGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAA GGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCA
genomic: CGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTT-AAAgtagtttatt ... ttgtgattagGGAGCTGAGAATAGCATGTACTGTAGCACAAATGGAGCGTGAAGGGGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGATTGGCATTGAAGCCCGATTGCCTATTTTTAGCAGCTATTCTTGGTGGAGAAACCTTAAAgtagtttattcacttgtttttcttcaaatctagtatagtatttcaatgcactaaaggcctaagtgttttttccatttttcttgtgattag
- - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA