1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAATTTAAAGAGCAAATTTTGGGGTCGGTCTATTCAGCTTGATCCCATTGGCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGgtatggagcaaatgattggaaagtgtttattctcttttagattccaatttaaaattggactttcttctatcag
species | Vitis vinifera |
transcript | Vv18s0001g03790.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAG GTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCACEST: gi|161719223|gb|FC065737.1|FC065737
genomic: GCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGgtatggagca ... cttctatcagGTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCAC
EST: GCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAG GTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCAC
genomic: GCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGgtatggagca ... cttctatcagGTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTTAAAGAGCAAATTTTGGGGTCGGTCTATTCAGCTTGATCCCATTGGCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGgtatggagcaaatgattggaaagtgtttattctcttttagattccaatttaaaattggactttcttctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA