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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTTGGGGATATGCTCCTTAACCATTCCAATGCTTTCTCTTTGCTGCCAAGGTCTGGATACAGAGACACTGCTGTCATCCTCATGCTCATTCATCAGgtcactactactatgctatttccatttctgcttgtcatgaattcctgactgagtatatatattgatcaaattgaaatctatgattttaagaaattttgagttctgaaatattttggtggtgggtgcag

Basic information

species Vitis vinifera
transcript Vv18s0001g03540.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 7
GGCTTTTGGGGATATGCTCCTTAACCATTCCAATGCTTTCTCTTTGCTGCCAAGGTCTGGATACAGAGACACTGCTGTCATCCTCATGCTCATTCATCAGgtcactactactatgctatttccatttctgct---tgtcatgaattcctgactgagtatatatattgatcaaattgaaatctatgattttaa-----gaaattttgagttctgaaatattttggtggtgggtgcag----------------------------------------
||| ||||||||   ||| || | ||||||||||||  |||| ||||| ||||||||||| | |||||| || || |||||||||||||||||||||||||| | |  ||  || | ||    |  | |  |   | | |  | |  || |    |||||     |  |||  || |  ||  | | ||| |      || || ||| |     | ||| |     | |  |   |                                        
GGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAGGTCTGGCTTCAGAGATACCGCCGTCATCCTCATGCTCATTCATCAGgttaattatatcatacaataaatacatatattaacttttaaaagtaacttatgttgtatacgctcttgtcatctt-atttcagtaagttttacacttaaagttatgaataagctattatctgataagagattattgggtaaatacttaatttccttatgtactaacctatttgcag

upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 7
GGCTTTTGGGGATATGCTCCTTAACCATTCCAATGCTTTCTCTTTGCTGCCAAGGTCTGGATACAGAGACACTGCTGTCATCCTCATGCTCATTCATCAGgtcactactactatgctatttccatttctgcttgtcatgaattcctgactgagtatatatattgatcaaattgaaatc-tatgattttaagaaattttg-------agttctgaaatattttggtggtgggtgcag------------------------------------------------
||| ||||||||   ||| || | ||||||||||||  |||| ||||| |||| | |||| | |||||| || ||||||||||||||||||||||||||||| | |  || |||     ||| ||   | | | | || || |  | |  |   |  ||| |||   ||  |    |  | |  ||| |  || ||||        |||| |||| ||   |  |  | | |                                                    
GGCATTTGGGGACCAGCTTCTCACCCATTCCAATGCCCTCTCATTGCTCCCAAAGACTGGTTTCAGAGATACCGCTGTCATCCTCATGCTCATTCATCAGgttaattatattatata--ttcaataaatacatat-attaacttttaaaagta-acttatgttgtataagctcttgttatcttgtttcagtaagttttacacacaaagttatgaa-taagctattatttgataagagcttattgaataaatacttaatttccttatgtactcacctatttgcag