Sequence
atgc intronic sequence ATGC exonic sequenceCAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G042295_T01 (Zea mays), 5'ss of exon 6
CAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcct--cttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
| ||||||||| | || |||| |||||||| | |||| | | |||| | | ||| | ||||||| ||||||||||| || |||||||||||||||||| | || || ||| ||| | | ||| || | || | || | | | | ||| | ||| | | |||| |||
CGAAATTTTGGGAGGACATAATTGATGGTTATATCCATGTCTTTAAGTGGAGGAAGTTCAAACTCCGAAATGTAATGGACATGAGGGCTGGATTTGGAGGgtatttttctcatatctcttcctttcatttgc-ttgctcggatgtccgatcacaaatacaagttcattagcatgg--tttttaaattggtat--ggcgaga-caag------------------------------------------------------
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G092120_T01 (Zea mays), 5'ss of exon 6
CAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
||||||||||| | || |||| | |||||| | | | | | |||| | | ||| | | ||||| ||||||||||| || |||||||||||||||||| | ||| ||||| | | || || ||||| | || ||| | ||||| | ||| |||| ||| |||| || || | | ||
CAAAATTTTGGGACGACATAATTGACGGTTATATCCGTATCTTTAAGTGGAGGAAGTTCAAAGTCCGGAATGTAATGGACATGAGGGCTGGATTTGGAGGgtatttt--tctcaaatctcttcc-tttcatttgcttcattggatgtatgattgcaagtacaaagtccattagaacttctacat-gttctctag------catgacacct------------------------------------------------
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 6
CAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
|||||| |||| |||| ||||| | ||||||| | |||| || ||| | |||| || ||||||||||| ||||||||||| |||||||||||||||||| | | | |||||| | || || | | | | ||||||| || || |||||| | || || | || | | || || | ||| | | ||||| | |||| | | | |
CAAAATATTGGTTTGAAATAATAGAAAGTTATGTACGGGCTTTCCGTTGGGAGGATTACAACTTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgagagtattacatttcttgctttctttt---tctgttatata---tta--catttgtcgg---ttattaggtttctgtagaatgatt-------gtctaatgttgttgttatccgtgtgtgta---ttatgtcgttga---taactgcag----
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 6
CAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
|||||| |||| |||| ||||| | ||||||||| |||| || ||| | || | || |||||||||| ||||||||||| |||||||||||||||||| | | | ||||| | || | || || | | | || | | | | | | |||| | | || || | | || | | || | ||||
CAAAATATTGGTTTGAAATAATAGAAAGTTATGTTCGGGCTTTCCGTTGGCAGGACTACAACCTGAGAAATGTAATGGACATGAGGGCAGGATTTGGAGGgtatgggagtattacatttcttgt-tttctttctctgttttatattacatttgttggttattaggcttctgtagttgtctggcct-tgctgctatctgtgtgtattatgatgtaactttcattataactgcag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28968089|gb|CB347122.1|CB347122EST: AATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGG GTTTGCAGCAGCACTAATTGATTTCCAAGTTGATTGCTGGGTTATGAATGT
genomic: AATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttctt ... ttatggatagGTTTGCAGCAGCACTAATTGATTTCCAAGTTGATTGCTGGGTTATGAATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAATTTTGGCATGAAGTAATATATGGTTATGTTCATGCTTACCACTGGAATGATTCAAAATTGAGAAATGTGATGGACATGAGAGCAGGATTTGGAGGgtattttcttttcattcctcttgcatctccaccactccattgcacagattcaggcatttgtgaagtcttcttgaatttctgcattattctttaatgagaacaaaagatctttttttttcagtgggaacttttatgacattgagtttgattatggatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG