1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaagggaaatttaaattatggtatagaattgcttttttggtcacatatgcatcaatattgagcagaattgcatattcagaagtccgatagatgtgca...
species | Vitis vinifera |
transcript | Vv18s0001g01580.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAG GTCTGTACCAGGGAACCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTEST: gi|349818013|gb|FQ408002.1|FQ408002
genomic: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaaggga ... aaaaaaacagGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
EST: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAG GTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTEST: gi|349818856|gb|FQ409390.1|FQ409390
genomic: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaaggga ... aaaaaaacagGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
EST: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAG GTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTEST: gi|351045299|gb|FQ451747.1|FQ451747
genomic: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaaggga ... aaaaaaacagGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
EST: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAG GTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCTEST: gi|37184462|gb|CF603816.1|CF603816
genomic: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaaggga ... aaaaaaacagGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
EST: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAG GTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
genomic: GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaaggga ... aaaaaaacagGTCTGTACCAGGGAATCAGACTCGCACACTAAACTAGAGCAACTAGTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAAGGTGCAGTGCTCAGTGCTTCTGAAGATGGCAAAAATGAGgtaaaagggaaatttaaattatggtatagaattgcttttttggtcacatatgcatcaatattgagcagaattgcatattcagaagtccgatagatgtgca
TGGAAG
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcagaa