Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAGCTTGCCTCACAATGCTTGCAGTATGAACCTAGGGAGCGGCCAAGTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGATgtaatttctctcatctatgctttcttcctttcaaacatttgcaattgttcttgtcccatggttcatatgttcacattggtgctattatttttggtgggtt...

Basic information

species Vitis vinifera
transcript Vv18s0001g00180.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22012691|gb|BQ797725.1|BQ797725
EST:     GTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGAT                         GTCCCATCTTATGTGATGCTTGGAATTCCAAAGCACGAGGAGGCACCTCCT
genomic: GTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGATgtaatttctc ... ttgattgcagGTCCCATCTTATGTGATGCTTGGAATTCCAAAGCACGAGGAGGCACCTCCT
EST: gi|34543647|gb|CF511879.1|CF511879
EST:     GTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGAT                         GTCCCATCTTATGTGATGCTTGGAATTCCAAAGCACGAGGAGGCACCTCCT
genomic: GTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGATgtaatttctc ... ttgattgcagGTCCCATCTTATGTGATGCTTGGAATTCCAAAGCACGAGGAGGCACCTCCT