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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCACGGGTAATACGTGATATGGTGACTAGgtatgtaatcattcagcaattttttccttattgtaatctaaacttgcaaagttaaactaggatctcttttttcagtccataatttgagatttcttggtac...

Basic information

species Vitis vinifera
transcript Vv17s0000g10260.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G13650.1 (Glycine max), 5'ss of exon 6
GGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCACGGGTAATACGTGATATGGTGACTAGgtatgtaat-cattcagcaattttttccttattgtaatctaa-acttgcaaagttaaactaggatctcttttttcagtccataatttgagatttcttggtac-
|||||||| |||| ||| |||| || | |   || |||||||| ||||||||||||  ||||||||||||||| || ||||||| ||||||||| ||||||||| | || || |     || ||  | | ||  | ||   | | ||  |    |  || |  ||  |||   || ||  || ||||   ||    | || | 
GGGAGGCTAATGCGATGCAAAGGATTAGAAAGTTCTTGTATGAAAATAACAAAAAGTCTCCTGTTTTGGTGCCGCGAGTAATACATGATATGGTTACTAGgtatattatgcagtttatcatctta-cataatcttgataagatagttttagtaatggacaataatg-cttaactcggtatattatttcc-atggagtagtgct

upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G02990.1 (Glycine max), 5'ss of exon 6
GGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCACGGGTAATACGTGATATGGTGACTAGgtatgtaatc--attcagcaattttttccttattg-taatctaaacttgcaaagttaaactaggatctcttttttcagtccataatttgagatttcttggtac-
|||||||| |||| |||||||| || | |   || |||||||| | ||||||||||  ||||||||||||||| || ||||||||  ||||||| ||||||||| | ||    || ||||  ||      | |||  ||  ||   ||   ||  || || |  ||  |||   |||||  || ||||        |  || | 
GGGAGGCTAATGCGATGGAAAGGATTAGAAAGTTCTTGTATGAAAGTAACAAAAAGACTCCTGTTTTGGTGCCGCGAGTAATACGAAATATGGTTACTAGgtatatgatgcagtttagcatcttacataatcttgacaagatagcattagtaa--tagacaataatg-cttaactcagtatattattttcagagggt-agtgct

upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G50330.2 (Arabidopsis thaliana), 5'ss of exon 5
GGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCACGGGTAATACGTGATATGGTGACTAGgtatgtaatc---attcagcaatt--ttttccttattg--taatctaa--acttgcaaag-----ttaaactaggatctcttttttcagtccataat---ttgagatttcttggtac----------------------------------------------------------------
|||||||  ||||||||||||||||   | ||||| | |||||||| |||||||||  |||||||||||| ||| | ||  | || ||||||||||||| ||| ||  ||    ||  |||  |  | | ||| ||||  |||| | |  |  |  || |     |  |  | |   ||||  | ||| |  ||       | | || |     |||                                                                
GGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAGATATGGTGACTAAgtaagtgttcttacttttgcatatcatatacctgattggttaatgtgataatgtttaaggccttctctagatggagcctctgctgtcatttaatggcatactcacatcttaaactacaatttttttttatcatttttgcttcgggtgatacttaccatatgaacaatcatgatttcctcag