Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACTGCACCTGAATTTCCTGGTCGATACATCTCATACTGGAGGATGGCTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattcattactgttgtcctattcatttttttaaacatgttttctcatgatgatttatctttcagtaaatcatgcacatatcaattcctcctccattactgttgttttattttctttttaaacttattataataattcaatggcctgtacttattcattccttattcatgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g09280.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09280.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G09210.1 (Glycine max), 5'ss of exon 7
TTTTACTGCACCTGAATTTCCTGGTCGATACATCTCATACTGGAGGATGGCTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgt----tcatattcattactgttgtcctattcatttttttaaacatgttttctcatgatgatttatctttcagtaaatcatgcacatatcaattcctcctccattactgttgttttattttctttttaaacttattataata-attcaatggcctgtacttattcattccttattcatgcag
 ||||| ||||||   || |||||||||||||| ||||||||||||||| |  | |||||||| || | |||||| ||||| |||||||| || || |||||    | | | || ||| |   |    | | |   | || ||    |||  |        |||   |   | |   | | | |||| |  |||   |    | |  |||  |  |||  |   |||     |||||| |||    ||                                  
CTTTACAGCACCTCCGTTACCTGGTCGATACATATCATACTGGAGGATGACAACTCCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTATACAGgtaaaatgagagtcctta-tacaggtaaaatgagagtgttgaaggaatttctt--------tttccttcatactggctgagggacat-ttgattttactcataatggtgtgataatatccttgctttct-tgtattatcatacgcacag---------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135185|gb|CB920523.1|CB920523
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110428225|gb|EC994690.1|EC994690
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110727900|gb|EE105187.1|EE105187
EST:     CTGCACCATCTGGCCCAACATTTGGGCAACCAGTTTGGGTTCCCATTCCG                         GTTGACAGTTCCCTGAAGGACC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACC
EST: gi|30125556|gb|CB910895.1|CB910895
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110730520|gb|EE107692.1|EE107692
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATACCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110699168|gb|EE075929.1|EE075929
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTANGTGATACCATGCCTGTCATNAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|351016642|gb|FQ424069.1|FQ424069
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCTCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30322657|gb|CD005919.1|CD005919
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|349823893|gb|FQ415304.1|FQ415304
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30325647|gb|CD008909.1|CD008909
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30127731|gb|CB913070.1|CB913070
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30306281|gb|CB983075.1|CB983075
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|32271005|gb|CD720164.1|CD720164
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110424289|gb|EC990645.1|EC990645
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATACCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30327006|gb|CD010268.1|CD010268
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30327640|gb|CD010902.1|CD010902
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30324895|gb|CD008157.1|CD008157
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110719040|gb|EE096561.1|EE096561
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATACCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110726600|gb|EE102523.1|EE102523
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|30306027|gb|CB982821.1|CB982821
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|351037577|gb|FQ462560.1|FQ462560
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
EST: gi|110690229|gb|EE067146.1|EE067146
EST:     CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAG                         GTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC
genomic: CTGCACCATCTGGCCAAACATTTGGGCAACGAGTTTGGGTTCTCATTCAGgttcatattc ... attcatgcagGTTGACAGTTCCCTGAAGGACCTGTTAGGTGATAGCATGCCTGTCATAAAC