Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttattttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 6
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttat-tttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTTGTTCCTTATGGTGATCCAAATGAACCACATTATCGGAAGAATGCATTTGATGCTGGAGAAGATGGGCTTGGAAAGAACGCAAACTCTCTTAAAAAGgttcttattttgatgt-tccatattagcacctcagtgtaatatacttgccata---aattttaatattagataatttgatctgat----tgagtgaacacaaaagagt--------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 7
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttattttaccttgtggaacttta-ctattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTTGTTCCTTATGGAGATCCCAATGAACCACATTATCGCAAGAATGCTTTTGATGCTGGAGAAGATGGACTTGGGAAGAATGCTCATTCTCTTAAGAGGgt----------gcttgctca-------gttcttaatgattttttacctccagagagttttaactttcatctgactattatatgcctttttttttgtag-----------------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 6
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttattttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTTGTTCCTTATGGAGATCCAAGTGAACCACATTATCGCAAGAATGCATTTGATGCTGGAGAAGATGGACTTGGAAAAAATGCTCATTCTCTTAAGAAGgttattttattcagttcttgatgtg-------------tatactttgacgttcaaaatttttctttgatttgactat----gctctttaacctttttgtgcag------------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G09290.1 (Glycine max), 5'ss of exon 5
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttat-tttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTTGTGCCATATGGAGATCCAAATGAACCACATTACAGGAAGAATGCCTTTCATGCTGGGGAAAATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGgtttgagaaac-----ctatatttatccttttcaatgttttatatttaccaagttcctcttt----ctgattaagtttcaatgag-------tctaaagtcaacatttg-ttgcag
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 6
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgt-ctataaaactatttcttcatgtaattgtccttaaatt-ttattttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTTGTTCCCTATGGAGATCCAAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGATTGGGAAAAAATGCACATTCCCTCAAGAAGgtattagaataatatttgttctcttgtatgcttatcatttgtcaccgtattctttctgattggattcctttttatctgaggttaatgtttgttgttacag-----------------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S9_129V6.1 (Physcomitrella patens), 5'ss of exon 7
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatt-tcttcatgtaattgtcc---ttaaattttattttaccttgtggaactttactattg-tttgaat-ctaaaagatcttctgctttaaaatgaaattatgaccacag
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GGTGGTTCCCTATGGAGACCCTAAGGACCCGCATTATAGGAAGAATGCATTCGATGCGGGAGAAGATGGGCTAGGAAAGAACTGCCACTCGTTAAAACGGgttagtactgctttcatcaccataggacgaattcaatcacgtctttgtctcttttgctggatgtggctcgtgatttagatgttgaaaggttcttaatcac---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862200|gb|DT011255.1|DT011255EST: TTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAG GGATGTGATTGTCTAGGGTTTATCAAATACTTTGA
genomic: TTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaa ... atgaccacagGGATGTGATTGTCTAGGGTTTATCAAATACTTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGTACCTTATGGAGACCCGAACGAACCCCATTACAGGAAGAATGCATTTGATGCTGGTGAAGATGGCCTGGGAAAAAATGCAAACTCTCTTAAAAAGgtctataaaactatttcttcatgtaattgtccttaaattttattttaccttgtggaactttactattgtttgaatctaaaagatcttctgctttaaaatgaaattatgaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG