Sequence
atgc intronic sequence ATGC exonic sequenceGCAAAAATCTGGTGTGGTTTTCAATACTGTGGGACAACTGATGGGGCTGCTTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGgcacagttcttctcacttcagatttgctttattttctttccctttttcctcttctttttgcattattaacttcttatgatgaaatttgcatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA05G01860.1 (Glycine max), 5'ss of exon 5
---------------------------GCAAAAATCTGGTGTGGTTTTCAATACTGTGGGACAACTGATGGGGCTGCTTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGgcacagttcttctcacttcagatttgctttattttctttccctttttcctcttctttttgcattattaacttcttatgatgaaatttgcatcag
||| || |||||||||| |||||| ||||||||||| ||| || |||||||| |||||| |||| | | | || |||||| ||||||||||||||||| || |||| | ||| || || || |||| | ||||||| ||| || |||| | |||||| ||||||
GAGGCACGTGTACTTCCCTTCTAATTCTCAAGAACCTGGTGTGGTCTTCAATGCTGTGGGACAAGTGACAGGACTGCTTTCTGAATGCGAGTATGTCACAgtagaaaagctgactgaaactgaaaaggcatttatcc-ctcatcacctattactttccttactctttccttccttctcttctcttta-ataattagcaa--tatgattttccac-catcag
upper sequence: Vv17s0000g07780.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G10040.1 (Glycine max), 5'ss of exon 5
GCAAAAATCTGGTGTGGTTTTCAATACTGTGGGACAACTGATGGGGCTGCTTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGgcacagttcttctcacttcagatttgctttattttctttccctttttcctcttctttttgcattattaacttcttatgatgaaattt--gcatcag
||| || |||||||||| |||||| ||||||||||| ||| || |||||||| |||||| | || | | | ||||||||| ||||||||||||||||| || |||| | ||| || || || |||| | ||||| ||| | | || ||| | || |||| || ||||||
TCAAGAACCTGGTGTGGTCTTCAATGCTGTGGGACAAGTGACAGGACTGCTTTCTGAATGCGATTATGTCACAGTAGATAAGCTGACTGAAACTGAAAAGgcatttatcc-ctcatcccctattactttccttactctttccttccttctcttatttct-ctttgataattagcaat-atgattttccaccatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867839|gb|DT016894.1|DT016894EST: TTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAG GTTGATGCCCCATA-CTTGATCGGTACTGCATTTA
genomic: TTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGgcacagttct ... tttgcatcagGTTGATGCCC-ATAACTTGATCGGTACTGCATTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAAAATCTGGTGTGGTTTTCAATACTGTGGGACAACTGATGGGGCTGCTTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGgcacagttcttctcacttcagatttgctttattttctttccctttttcctcttctttttgcattattaacttcttatgatgaaatttgcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG